myRT

myRT report for GCA_005116835.1_ASM511683v1

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Seq: SWDM01000018.1 Nitrospira sp. isolate RSF3 Nitrospira_sp_RSF3_18, whole genome shotgun sequence (543498 bp)
Overview 1 RT 1: 85076-92339 bp Neighborhood of RT #1 [85076, 92356] RVT-UG12 HATPase_c AtoC Feature: gene Location: 85076-85867 bp Feature: gene Location: 86068-86142 bp Feature: gene Location: 86638-88218 bp Ori: TKB72960.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 86986-87433 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 86986-87433 bp Feature: gene Location: 88262-90265 bp Ori: TKB72961.1 Feature: domain Description: HATPase_c Location: 88331-88667 bp Feature: domain Description: HATPase_c Location: 88331 -88667 bp Feature: gene Location: 90920-92356 bp Ori: TKB72962.1 Feature: domain Description: AtoC Location: 90932-92339 bp Feature: domain Description: AtoC Location: 90932-92339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG12, HATPase_c (smart00387), AtoC (COG2204)

Seq: SWDM01000019.1 Nitrospira sp. isolate RSF3 Nitrospira_sp_RSF3_19, whole genome shotgun sequence (197601 bp)
Overview 1 RT 1: 93616-98171 bp Neighborhood of RT #1 [93616, 98185] DUF1810 nitrilase RVT-UG5 Lon_C HTH_37 Feature: gene Location: 93616-93819 bp Ori: TKB72589.1 Feature: domain Description: DUF1810 Location: 93628-93805 bp Feature: domain Description: DUF1810 Location: 9362 8-93805 bp Feature: gene Location: 93978-94922 bp Ori: TKB72590.1 Feature: domain Description: nitrilase Location: 94209-94812 bp Feature: domain Description: nitrilase Location: 942 09-94812 bp Feature: gene Location: 94919-96889 bp Ori: TKB72591.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 95387-95885 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 95387-95885 bp Feature: gene Location: 97696-97872 bp Ori: TKB72592.1 Feature: domain Description: Lon_C Location: 97699-97807 bp Feature: domain Description: Lon_C Location: 97699-97807 bp Feature: gene Location: 97874-98185 bp Ori: TKB72593.1 Feature: domain Description: HTH_37 Location: 97946-98171 bp Feature: domain Description: HTH_37 Location: 97946-98171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1810 (pfam08837), nitrilase (cl11424), RVT-UG5, Lon_C (pfam05362), HTH_37 (pfam13744)

Seq: SWDM01000024.1 Nitrospira sp. isolate RSF3 Nitrospira_sp_RSF3_24, whole genome shotgun sequence (290768 bp)
Overview 1 RT 1: 124496-127815 bp Neighborhood of RT #1 [124496, 127826] HTH_17 RadC RVT_N RVT-GII GIIM PRK00024 Feature: gene Location: 124496-124789 bp Ori: TKB71259.1 Feature: domain Description: HTH_17 Location: 124502-124643 bp Feature: domain Description: HTH_17 Location: 124502-124643 bp Feature: gene Location: 125082-125432 bp Ori: TKB71418.1 Feature: domain Description: RadC Location: 125199-125394 bp Feature: domain Description: RadC Location: 125199-1253 94 bp Feature: gene Location: 125507-127021 bp Ori: TKB71260.1 Gene: ltrA Feature: domain Description: RVT_N Location: 125558-125792 bp Feature: domain Description: RVT_N Location: 125558-125792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125846-126497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125846-126497 bp Feature: domain Description: GIIM Note: maturase Location: 126554-126785 bp Feature: domain Description: GIIM Note: maturase Location: 126554-126785 bp Feature: gene Location: 127106-127462 bp Feature: gene Location: 127623-127826 bp Ori: TKB71262.1 Feature: domain Description: PRK00024 Location: 127659-127815 bp Feature: domain Description: PRK00024 Location: 127659-127815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RadC (pfam04002), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK00024 (DNA repair protein RadC)

Seq: SWDM01000016.1 Nitrospira sp. isolate RSF3 Nitrospira_sp_RSF3_16, whole genome shotgun sequence (773569 bp)
Overview 1 RT 1: 273527-279038 bp Neighborhood of RT #1 [273527, 279046] COG4679 CYTH-like_Pase CHAD RVT-GII GIIM CDKN3-like Feature: gene Location: 273527-273865 bp Ori: TKB73809.1 Feature: domain Description: COG4679 Location: 273533-273854 bp Feature: domain Description: COG4 679 Location: 273533-273854 bp Feature: gene Location: 274606-276102 bp Ori: TKB73810.1 Feature: domain Description: CYTH-like_Pase Location: 274684-275161 bp Feature: domain Description: CYTH-like_Pase Location: 274 684 -275161 bp Feature: domain Description: CHAD Location: 275287-276037 bp Feature: domain Description: CHAD Location: 275287-276037 bp Feature: gene Location: 276294-277631 bp Ori: TKB73811.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276585-277245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276585-27724 5 bp Feature: domain Description: GIIM Note: maturase Location: 277314-277539 bp Feature: domain Description: GIIM Note: maturase Location: 277314 -277539 bp Feature: gene Location: 277622-277849 bp Feature: gene Location: 278576-279046 bp Ori: TKB73812.1 Feature: domain Description: CDKN3-like Location: 278669-279038 bp Feature: domain Description: CDKN3-like Location: 278669-279038 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4679 (Phage-related protein ), CYTH-like_Pase (cl11964), CHAD (smart00880), RVT-GII, GIIM (pfam08388), CDKN3-like (cd14505)