myRT

myRT report for GCA_005144545.1_ASM514454v1

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Seq: SWKB01000008.1 Azotobacter chroococcum strain P208 NODE_107, whole genome shotgun sequence (12909 bp)
Overview 1 RT 1: 9695-12621 bp Neighborhood of RT #1 [9695, 12719] chp_urease_rgn DUF772 RVT-GII GIIM Feature: gene Location: 9695-10351 bp Feature: domain Description: chp_urease_rgn Location: 9719-10310 bp Feature: domain Description: chp_urease_rgn Location: 971 9-1 031 0 bp Feature: gene Location: 10417-10956 bp Feature: domain Description: DUF772 Location: 10567-10762 bp Feature: domain Description: DUF772 Location: 1 0567-1 0762 bp Feature: gene Location: 11451-12719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11664-12321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 664-1 2321 bp Feature: domain Description: GIIM Note: maturase Location: 12399-12621 bp Feature: domain Description: GIIM Note: maturase Location: 1 2399-1 2621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT chp_urease_rgn (TIGR02117), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: SWKB01000009.1 Azotobacter chroococcum strain P208 NODE_108, whole genome shotgun sequence (12899 bp)
Overview 1 RT 1: 512-4555 bp Neighborhood of RT #1 [512, 4566] RVT_N RVT-GII YkfC HNHc PRK10416 FtsE Feature: gene Location: 512-2323 bp Feature: domain Description: RVT_N Location: 650-893 bp Feature: domain Description: RVT_N Location: 650-893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 941-1592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 941-1592 bp Feature: domain Description: YkfC Location: 1748-1928 bp Feature: domain Description: YkfC Location: 1748-192 8 bp Feature: domain Description: HNHc Note: nucleases Location: 2129-2282 bp Feature: domain Description: HNHc Note: nucleases Location: 2 12 9-2 2 82 bp Feature: gene Location: 2516-3901 bp Feature: domain Description: PRK10416 Location: 2600-3887 bp Feature: domain Description: PRK10416 Location: 2 600-3887 bp Feature: gene Location: 3898-4566 bp Feature: domain Description: FtsE Location: 3901-4555 bp Feature: domain Description: FtsE Location: 3901-4555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), PRK10416 (signal recognition particle-docking protein FtsY; Provisional), FtsE (TIGR02673)

Seq: SWKB01000061.1 Azotobacter chroococcum strain P208 NODE_155, whole genome shotgun sequence (4367 bp)
Overview 1 RT 1: 3-2556 bp Neighborhood of RT #1 [3, 2582] RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 3-182 bp Feature: gene Location: 494-2023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 983-1649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 983 -1649 bp Feature: domain Description: GIIM Note: maturase Location: 1715-1937 bp Feature: domain Description: GIIM Note: maturase Location: 1715-193 7 bp Feature: gene Location: 2029-2244 bp Feature: gene Location: 2277-2582 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2337-2421 bp Feature: domain Description: DDE_Tnp_IS66 Location: 23 3 7-2421 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2442-2556 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2442-2556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: SWKB01000080.1 Azotobacter chroococcum strain P208 NODE_172, whole genome shotgun sequence (2901 bp)
Overview 1 RT 1: 127-2777 bp Neighborhood of RT #1 [127, 2777] RVT-GII GIIM Feature: gene Location: 127-318 bp Feature: gene Location: 335-463 bp Feature: gene Location: 732-2075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1044-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104 4 -1662 bp Feature: domain Description: GIIM Note: maturase Location: 1710-1932 bp Feature: domain Description: GIIM Note: maturase Location: 1710-1932 bp Feature: gene Location: 2318-2581 bp Feature: gene Location: 2646-2777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SWKB01000093.1 Azotobacter chroococcum strain P208 NODE_184, whole genome shotgun sequence (1693 bp)
Overview 1 RT 1: 3-1600 bp Neighborhood of RT #1 [3, 1692] RVT-GII GIIM TnpB_IS66 LZ_Tnp_IS66 zf-IS66 Feature: gene Location: 3-857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-45 0 bp Feature: domain Description: GIIM Note: maturase Location: 528-750 bp Feature: domain Description: GIIM Note: maturase Location: 5 28-75 0 bp Feature: gene Location: 891-1094 bp Feature: domain Description: TnpB_IS66 Location: 915-1059 bp Feature: domain Description: TnpB_IS66 Location: 915 -105 9 bp Feature: gene Location: 1114-1692 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1219-1447 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1219-1447 bp Feature: domain Description: zf-IS66 Location: 1474-1600 bp Feature: domain Description: zf-IS66 Location: 1474-1600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005)

Seq: SWKB01000121.1 Azotobacter chroococcum strain P208 NODE_209, whole genome shotgun sequence (1095 bp)
Overview 1 RT 1: 3-1088 bp Neighborhood of RT #1 [3, 1093] RVT-GII Feature: gene Location: 3-176 bp Feature: gene Location: 557-1093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 761-1088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76 1-1088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SWKB01000124.1 Azotobacter chroococcum strain P208 NODE_211, whole genome shotgun sequence (1071 bp)
Overview 1 RT 1: 62-1064 bp Neighborhood of RT #1 [62, 1069] RVT_N RVT-GII Feature: gene Location: 62-1069 bp Feature: domain Description: RVT_N Location: 146-362 bp Feature: domain Description: RVT_N Location: 146-362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422-1064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422-1064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: SWKB01000125.1 Azotobacter chroococcum strain P208 NODE_212, whole genome shotgun sequence (1071 bp)
Overview 1 RT 1: 62-1064 bp Neighborhood of RT #1 [62, 1069] RVT_N RVT-GII Feature: gene Location: 62-1069 bp Feature: domain Description: RVT_N Location: 146-368 bp Feature: domain Description: RVT_N Location: 146-368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422-1064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422-1064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: SWKB01000140.1 Azotobacter chroococcum strain P208 NODE_229, whole genome shotgun sequence (700 bp)
Overview 1 RT 1: 3-405 bp Neighborhood of RT #1 [3, 623] RVT-GII GIIM Feature: gene Location: 3-623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-120 bp Feature: domain Description: GIIM Note: maturase Location: 171-405 bp Feature: domain Description: GIIM Note: maturase Location: 171-405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SWKB01000185.1 Azotobacter chroococcum strain P208 NODE_43, whole genome shotgun sequence (43338 bp)
Overview 1 RT 1: 38588-42801 bp Neighborhood of RT #1 [38588, 42827] PRK09077 SdhE RVT_N RVT-GII YkfC HNHc Feature: gene Location: 38588-40204 bp Feature: domain Description: PRK09077 Location: 38594-40193 bp Feature: domain Description: PRK09077 Location: 38594-40193 bp Feature: gene Location: 40609-40863 bp Feature: domain Description: SdhE Location: 40615-40855 bp Feature: domain Description: SdhE Location: 40615-40855 bp Feature: gene Location: 41040-42827 bp Feature: domain Description: RVT_N Location: 41178-41421 bp Feature: domain Description: RVT_N Location: 41178-41421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41469-42120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41469-42120 bp Feature: domain Description: YkfC Location: 42351-42447 bp Feature: domain Description: YkfC Location: 42351-42447 bp Feature: domain Description: HNHc Note: nucleases Location: 42657-42801 bp Feature: domain Description: HNHc Note: nucleases Location: 42657-42801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09077 (L-aspartate oxidase; Provisional), SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: SWKB01000214.1 Azotobacter chroococcum strain P208 NODE_6, whole genome shotgun sequence (107807 bp)
Overview 1 RT 1: 96784-102406 bp Neighborhood of RT #1 [96784, 102406] groES groEL RVT_N RVT-GII GIIM HNH PRK10839 Feature: gene Location: 96784-97077 bp Feature: domain Description: groES Location: 96787-97072 bp Feature: domain Description: groES Location: 96787-97072 bp Feature: gene Location: 97124-98764 bp Feature: domain Description: groEL Location: 97130-98750 bp Feature: domain Description: groEL Location: 97130-98750 bp Feature: gene Location: 99783-101489 bp Feature: domain Description: RVT_N Location: 99852-100092 bp Feature: domain Description: RVT_N Location: 99852-100092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100140-100785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100140-100785 bp Feature: domain Description: GIIM Note: maturase Location: 100836-101070 bp Feature: domain Description: GIIM Note: maturase Location: 100836-101070 bp Feature: domain Description: HNH Note: nucleases Location: 101310-101445 bp Feature: domain Description: HNH Note: nucleases Location: 101310-101445 bp Feature: gene Location: 101732-102442 bp Feature: domain Description: PRK10839 Location: 101753-102434 bp Feature: domain Description: PRK10839 Location: 101753-102434 bp Feature: gene Location: 102137-102406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PRK10839 (16S rRNA pseudouridine(516) synthase RsuA)