myRT

myRT report for GCA_005145745.1_ASM514574v1

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Seq: SYUP01000001.1 Vibrio sp. F12 strain 10N.286.45.A2 10N.286.45.A2_contig_0, whole genome shotgun sequence (128368 bp)
Overview 1 RT 1: 123931-127602 bp Neighborhood of RT #1 [123931, 127826] INT_tnpB_C_Tn554 RVT-GII GIIM Feature: gene Location: 123931-125979 bp Feature: domain Description: INT_tnpB_C_Tn554 Location: 124879-125440 bp Feature: domain Description: INT_tnpB_C_Tn554 Location: 1 24879-1 25440 bp Feature: gene Location: 125979-126437 bp Feature: gene Location: 126513-127826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126732-127344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 26732-1 27344 bp Feature: domain Description: GIIM Note: maturase Location: 127398-127602 bp Feature: domain Description: GIIM Note: maturase Location: 1 27398-1 27602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_tnpB_C_Tn554 (cd01187), RVT-GII, GIIM (pfam08388)

Seq: SYUP01000175.1 Vibrio sp. F12 strain 10N.286.45.A2 10N.286.45.A2_contig_174, whole genome shotgun sequence (3016 bp)
Overview 1 RT 1: 1-2767 bp Neighborhood of RT #1 [1, 3015] TIGR02646 COG3950 RVT-Retrons Feature: gene Location: 1-435 bp Feature: domain Description: TIGR02646 Location: 70-409 bp Feature: domain Description: TIGR02 646 Location: 70-409 bp Feature: gene Location: 441-2069 bp Feature: domain Description: COG3950 Location: 624-1875 bp Feature: domain Description: COG3950 Location: 62 4-1875 bp Feature: gene Location: 2059-3015 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2164-2767 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 164-2 767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence )

Seq: SYUP01000036.1 Vibrio sp. F12 strain 10N.286.45.A2 10N.286.45.A2_contig_35, whole genome shotgun sequence (118428 bp)
Overview 1 RT 1: 3-3873 bp Neighborhood of RT #1 [3, 3956] MdlB RVT_N RVT-GII GIIM MdlB Feature: gene Location: 3-377 bp Feature: domain Description: MdlB Location: 30-330 bp Feature: domain Description: MdlB Location: 3 0-3 3 0 bp Feature: gene Location: 463-2094 bp Feature: RT Description: RVT_N Location: 670-913 bp Feature: RT Description: RVT_N Location: 670-913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958-1585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958-1585 bp Feature: domain Description: GIIM Note: maturase Location: 1645-1870 bp Feature: domain Description: GIIM Note: maturase Location: 1645-1870 bp Feature: gene Location: 2130-2273 bp Feature: gene Location: 2430-3956 bp Feature: domain Description: MdlB Location: 2457-3873 bp Feature: domain Description: MdlB Location: 2457-3 873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MdlB (COG1132), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)