myRT

myRT report for GCA_005145785.1_ASM514578v1

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Seq: SYUN01000144.1 Vibrio kanaloae strain 10N.286.45.A9 10N.286.45.A9_contig_143, whole genome shotgun sequence (1239 bp)
Overview 1 RT 1: 330-1239 bp Neighborhood of RT #1 [330, 1238] RVT_N RVT-GII Feature: gene Location: 330-1238 bp Feature: RT Description: RVT_N Location: 384-627 bp Feature: RT Description: RVT_N Location: 384-627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672-1239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672-1 239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: SYUN01000154.1 Vibrio kanaloae strain 10N.286.45.A9 10N.286.45.A9_contig_153, whole genome shotgun sequence (1899 bp)
Overview 1 RT 1: 2-1729 bp Neighborhood of RT #1 [2, 1896] RVT-GII GIIM 3a0107s01c2 Feature: gene Location: 2-589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-80 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-80 bp Feature: domain Description: GIIM Note: maturase Location: 137-365 bp Feature: domain Description: GIIM Note: maturase Location: 137-365 bp Feature: gene Location: 885-1175 bp Feature: gene Location: 1156-1896 bp Feature: domain Description: 3a0107s01c2 Location: 1474-1729 bp Feature: domain Description: 3a0107s01c2 Location: 1474-172 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 3a0107s01c2 (TIGR00972), RVT-GII, GIIM (pfam08388)

Seq: SYUN01000155.1 Vibrio kanaloae strain 10N.286.45.A9 10N.286.45.A9_contig_154, whole genome shotgun sequence (1947 bp)
Overview 1 RT 1: 675-1722 bp Neighborhood of RT #1 [675, 1946] RVT-GII GIIM Feature: gene Location: 675-836 bp Feature: gene Location: 1359-1946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1362-1437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 62-143 7 bp Feature: domain Description: GIIM Note: maturase Location: 1494-1722 bp Feature: domain Description: GIIM Note: maturase Location: 1494-1722 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SYUN01000005.1 Vibrio kanaloae strain 10N.286.45.A9 10N.286.45.A9_contig_4, whole genome shotgun sequence (166363 bp)
Overview 1 RT 1: 83069-87654 bp Neighborhood of RT #1 [83069, 87824] AlpA sigma70-ECF RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 83069-83293 bp Feature: domain Description: AlpA Location: 83108-83276 bp Feature: domain Description: AlpA Location: 83108-83276 bp Feature: gene Location: 83414-84106 bp Feature: domain Description: sigma70-ECF Location: 83477-84089 bp Feature: domain Description: sigma70-ECF Location: 834 77-84 089 bp Feature: gene Location: 84502-85446 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 84601-85198 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 84 601-85198 bp Feature: gene Location: 85439-87064 bp Feature: domain Description: COG3950 Location: 85622-86993 bp Feature: domain Description: COG3950 Location: 85622-86993 bp Feature: gene Location: 87051-87824 bp Feature: domain Description: TIGR02646 Location: 87123-87654 bp Feature: domain Description: TIGR0264 6 Location: 87123-87654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlpA (COG3311), sigma70-ECF (TIGR02937), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)