myRT

myRT report for GCA_005145845.1_ASM514584v1

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Seq: SYUQ01000021.1 Vibrio kanaloae strain 10N.261.54.A10 10N.261.54.A10_contig_20, whole genome shotgun sequence (201497 bp)
Overview 1 RT 1: 6161-12811 bp 2 RT 2: 18259-24825 bp Neighborhood of RT #1 [6161, 12825] RVT-Retrons UvrD UvrD UvrD Neighborhood of RT #2 [18259, 24860] HTH_XRE RVT-Retrons PRK05658 dnaG Feature: gene Location: 6161-6802 bp Feature: gene Location: 7219-8064 bp Feature: gene Location: 8312-9496 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8567-9224 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8567-9224 bp Feature: gene Location: 9662-10927 bp Feature: gene Location: 11179-12825 bp Feature: domain Description: UvrD Location: 11242-11503 bp Feature: domain Description: UvrD Location: 1 1 242-1 1 503 bp Feature: domain Description: UvrD Location: 11566-12280 bp Feature: domain Description: UvrD Location: 1 1 566-1 2280 bp Feature: domain Description: UvrD Location: 12472-12811 bp Feature: domain Description: UvrD Location: 1 2472-1 281 1 bp Feature: gene Location: 18259-18606 bp Feature: gene Location: 18646-18951 bp Feature: domain Description: HTH_XRE Location: 18661-18823 bp Feature: domain Description: HTH_XRE Location: 1 8661 -1 8823 bp Feature: gene Location: 18932-19891 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19106-19661 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 91 06-1 9661 bp Feature: gene Location: 21168-23009 bp Feature: domain Description: PRK05658 Location: 21174-23007 bp Feature: domain Description: PRK05658 Location: 21 1 74-23007 bp Feature: gene Location: 23109-24860 bp Feature: domain Description: dnaG Location: 23118-24825 bp Feature: domain Description: dnaG Location: 231 1 8-24825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, UvrD (COG0210), HTH_XRE (smart00530), PRK05658 (RNA polymerase sigma factor RpoD; Validated), dnaG (TIGR01391)