myRT

myRT report for GCA_005145865.1_ASM514586v1

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Seq: SYUO01000024.1 Vibrio sp. F12 strain 10N.286.45.A3 10N.286.45.A3_contig_23, whole genome shotgun sequence (1198 bp)
Overview 1 RT 1: 197-1193 bp Neighborhood of RT #1 [197, 1195] RVT-GII GIIM Feature: gene Location: 197-1195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416-1028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 6-1 028 bp Feature: domain Description: GIIM Note: maturase Location: 1082-1193 bp Feature: domain Description: GIIM Note: maturase Location: 1 082-1 1 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SYUO01000004.1 Vibrio sp. F12 strain 10N.286.45.A3 10N.286.45.A3_contig_3, whole genome shotgun sequence (54161 bp)
Overview 1 RT 1: 320-3374 bp Neighborhood of RT #1 [320, 3550] RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 320-1279 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 428-1031 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42 8-1031 bp Feature: gene Location: 1269-2897 bp Feature: domain Description: COG3950 Location: 1452-2703 bp Feature: domain Description: COG3950 Location: 1452 -2 703 bp Feature: gene Location: 2903-3550 bp Feature: domain Description: TIGR02646 Location: 2972-3374 bp Feature: domain Description: TIGR02 646 Location: 2 972 -3374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein), RVT-Retrons

Seq: SYUO01000054.1 Vibrio sp. F12 strain 10N.286.45.A3 10N.286.45.A3_contig_53, whole genome shotgun sequence (119045 bp)
Overview 1 RT 1: 86-3974 bp Neighborhood of RT #1 [86, 4057] MdlB RVT_N RVT-GII GIIM MdlB Feature: gene Location: 86-478 bp Feature: domain Description: MdlB Location: 113-413 bp Feature: domain Description: MdlB Location: 113 -413 bp Feature: gene Location: 564-2195 bp Feature: RT Description: RVT_N Location: 771-1014 bp Feature: RT Description: RVT_N Location: 771-1014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1059-1686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1059-1686 bp Feature: domain Description: GIIM Note: maturase Location: 1746-1971 bp Feature: domain Description: GIIM Note: maturase Location: 1746-1971 bp Feature: gene Location: 2231-2374 bp Feature: gene Location: 2531-4057 bp Feature: domain Description: MdlB Location: 2558-3974 bp Feature: domain Description: MdlB Location: 2558-3 974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MdlB (COG1132), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)