myRT

myRT report for GCA_005146165.1_ASM514616v1

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Seq: SWMI01000037.1 Escherichia coli strain SIEC025 26_NODE_37, whole genome shotgun sequence (28093 bp)
Overview 1 RT 1: 2322-6322 bp Neighborhood of RT #1 [2322, 6330] DcuC RVT-GII RVT-GII Asparaginase_2 Feature: gene Location: 2322-3683 bp Ori: TKE09817.1 Feature: domain Description: DcuC Location: 2325-3657 bp Feature: domain Description: DcuC Location: 2325-3657 bp Feature: gene Location: 3736-3963 bp Feature: gene Location: 4329-4775 bp Ori: TKE09818.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4635-4737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4635-4737 bp Feature: gene Location: 4727-4891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4730-4886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4730-4886 bp Feature: gene Location: 4918-5141 bp Feature: gene Location: 5299-6330 bp Ori: TKE09819.1 Feature: domain Description: Asparaginase_2 Location: 5389-6322 bp Feature: domain Description: Asparaginase_2 Location: 5389-6322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: SWMI01000010.1 Escherichia coli strain SIEC025 26_NODE_10, whole genome shotgun sequence (197340 bp)
Overview 1 RT 1: 157460-161339 bp Neighborhood of RT #1 [157460, 161344] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 157460-158176 bp Ori: TKE17750.1 Feature: domain Description: rph Location: 157463-158171 bp Feature: domain Description: rph Location: 157463-158171 bp Feature: gene Location: 158242-158883 bp Ori: TKE17751.1 Gene: pyrE Feature: domain Description: pyrE Location: 158245-158878 bp Feature: domain Description: pyrE Location: 1582 45-158878 bp Feature: gene Location: 159181-160140 bp Ori: TKE17752.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 159316-159865 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 159316-159865 bp Feature: gene Location: 160186-160782 bp Ori: TKE17753.1 Gene: slmA Feature: domain Description: slmA Location: 160192-160768 bp Feature: domain Description: slmA Location: 160192 -160768 bp Feature: gene Location: 160889-161344 bp Ori: TKE17796.1 Feature: domain Description: dut Location: 160892-161339 bp Feature: domain Description: dut Location: 160892 -161339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: SWMI01000034.1 Escherichia coli strain SIEC025 26_NODE_34, whole genome shotgun sequence (39036 bp)
Overview 1 RT 1: 7537-11894 bp Neighborhood of RT #1 [7537, 11894] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 7537-8766 bp Ori: TKE10625.1 Feature: domain Description: YesM Location: 8017-8758 bp Feature: domain Description: YesM Location: 8017-8758 bp Feature: gene Location: 8839-9027 bp Feature: gene Location: 9415-9936 bp Ori: TKE10627.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9421-9703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9421-9703 bp Feature: domain Description: GIIM Note: maturase Location: 9751-9931 bp Feature: domain Description: GIIM Note: maturase Location: 9751-993 1 bp Feature: gene Location: 10112-10503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10442-10502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10442-10502 bp Feature: gene Location: 10728-11015 bp Feature: gene Location: 10989-11894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)