myRT

myRT report for GCA_005146255.2_ASM514625v2

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Seq: SWMO02000537.1 Escherichia coli strain 10 GCID_STAPE_0009_NODE_12.ctg_1, whole genome shotgun sequence (111178 bp)
Overview 1 RT 1: 82553-88584 bp Neighborhood of RT #1 [82553, 88584] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 82553-83473 bp Ori: TXD33013.1 Feature: domain Description: AbiEii Location: 82595-83336 bp Feature: domain Description: AbiEii Location: 82595-83336 bp Feature: gene Location: 83460-84263 bp Ori: TXD33014.1 Feature: domain Description: AbiEi_3_N Location: 83493-83754 bp Feature: domain Description: AbiEi_3_N Location: 83493-83754 bp Feature: domain Description: AbiEi_3 Location: 83766-84222 bp Feature: domain Description: AbiEi_3 Location: 83766-84222 bp Feature: gene Location: 84558-87767 bp Ori: TXD33015.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 85086-85575 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 85086-85575 bp Feature: domain Description: nitrilase Location: 87081-87678 bp Feature: domain Description: nitrilase Location: 87081 -87678 bp Feature: gene Location: 87928-88068 bp Ori: TXD33016.1 Feature: domain Description: Phage_ASH Location: 87955-88048 bp Feature: domain Description: Phage_ASH Location: 87955-88048 bp Feature: gene Location: 88114-88584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: SWMO02000592.1 Escherichia coli strain 10 GCID_STAPE_0009_NODE_37.ctg_1, whole genome shotgun sequence (42138 bp)
Overview 1 RT 1: 13841-18190 bp Neighborhood of RT #1 [13841, 18198] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 13841-14746 bp Feature: gene Location: 14720-15007 bp Feature: gene Location: 15232-15623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15562-15622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15562 -1562 2 bp Feature: gene Location: 15799-16320 bp Ori: TXD31113.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15805-16087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15805-16087 bp Feature: domain Description: GIIM Note: maturase Location: 16135-16315 bp Feature: domain Description: GIIM Note: maturase Location: 16135-16315 bp Feature: gene Location: 16708-16896 bp Feature: gene Location: 16969-18198 bp Ori: TXD31115.1 Feature: domain Description: YesM Location: 17449-18190 bp Feature: domain Description: YesM Location: 17449-18190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: SWMO02000635.1 Escherichia coli strain 10 GCID_STAPE_0009_NODE_43.ctg_1, whole genome shotgun sequence (33988 bp)
Overview 1 RT 1: 17961-21291 bp Neighborhood of RT #1 [17961, 21291] PyrBI_leader RVT-GII CdiI_3 Feature: gene Location: 17961-18122 bp Ori: TXD27893.1 Feature: domain Description: PyrBI_leader Location: 17994-18120 bp Feature: domain Description: PyrBI_leader Location: 17994-18120 bp Feature: gene Location: 18125-18343 bp Feature: gene Location: 18593-19884 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18914-19001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18914-19001 bp Feature: gene Location: 20331-20717 bp Ori: TXD27895.1 Gene: cdiI Feature: domain Description: CdiI_3 Location: 20355-20631 bp Feature: domain Description: CdiI_3 Location: 203 55-2063 1 bp Feature: gene Location: 20714-21291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PyrBI_leader (pfam08052), RVT-GII, CdiI_3 (pfam18616)

Seq: SWMO02000215.1 Escherichia coli strain 10 GCID_STAPE_0009_NODE_221.ctg_1, whole genome shotgun sequence (2271 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 672-2180 bp Ori: TXD52837.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SWMO02000083.1 Escherichia coli strain 10 GCID_STAPE_0009_NODE_104.ctg_1, whole genome shotgun sequence (8336 bp)
Overview 1 RT 1: 4442-8077 bp Neighborhood of RT #1 [4442, 8077] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 4442-4675 bp Ori: TXD57024.1 Feature: domain Description: DUF905 Location: 4472-4670 bp Feature: domain Description: DUF905 Location: 4472-4670 bp Feature: gene Location: 4732-5229 bp Ori: TXD57025.1 Gene: ssb Feature: domain Description: PRK13732 Location: 4735-5227 bp Feature: domain Description: PRK13732 Location: 4735 -5 227 bp Feature: gene Location: 5379-7280 bp Ori: TXD57026.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5646-6477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 646-6477 bp Feature: domain Description: Intron_maturas2 Location: 6591-6849 bp Feature: domain Description: Intron_maturas2 Location: 65 91-6849 bp Feature: domain Description: HNHc Note: nucleases Location: 7023-7185 bp Feature: domain Description: HNHc Note: nucleases Location: 7023-7185 bp Feature: gene Location: 7894-7971 bp Feature: gene Location: 7958-8077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)