myRT

myRT report for GCA_005146425.1_ASM514642v1

Download annotations/find similar RTs

Seq: SYUZ01000043.1 Vibrio sp. F13 strain 10N.222.55.E12 10N.222.55.E12_contig_42, whole genome shotgun sequence (5826 bp)
Overview 1 RT 1: 2578-5741 bp Neighborhood of RT #1 [2578, 5824] SSL2 RVT_N RVT-GII Feature: gene Location: 2578-3957 bp Feature: domain Description: SSL2 Location: 2584-3811 bp Feature: domain Description: SSL2 Location: 2584-381 1 bp Feature: gene Location: 4478-4621 bp Feature: gene Location: 4856-5824 bp Feature: domain Description: RVT_N Location: 4904-5147 bp Feature: domain Description: RVT_N Location: 4904-51 47 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5192-5741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 92-5741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SSL2 (COG1061), RVT_N (pfam13655), RVT-GII

Seq: SYUZ01000052.1 Vibrio sp. F13 strain 10N.222.55.E12 10N.222.55.E12_contig_51, whole genome shotgun sequence (52955 bp)
Overview 1 RT 1: 49660-52754 bp Neighborhood of RT #1 [49660, 52754] REC RVT-GII GIIM Feature: gene Location: 49660-50157 bp Feature: domain Description: REC Location: 49681-50041 bp Feature: domain Description: REC Location: 49681-50041 bp Feature: gene Location: 50444-50986 bp Feature: gene Location: 51100-52413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51319-51931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51319-51931 bp Feature: domain Description: GIIM Note: maturase Location: 51985-52189 bp Feature: domain Description: GIIM Note: maturase Location: 51985-52 189 bp Feature: gene Location: 52623-52754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT REC (smart00448), RVT-GII, GIIM (pfam08388)

Seq: SYUZ01000057.1 Vibrio sp. F13 strain 10N.222.55.E12 10N.222.55.E12_contig_56, whole genome shotgun sequence (40794 bp)
Overview 1 RT 1: 519-6061 bp Neighborhood of RT #1 [519, 6061] RVT-UG4 Feature: gene Location: 519-1019 bp Feature: gene Location: 1294-2271 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1654-2107 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1654-2107 bp Feature: gene Location: 2407-5262 bp Feature: gene Location: 5711-6061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: SYUZ01000065.1 Vibrio sp. F13 strain 10N.222.55.E12 10N.222.55.E12_contig_64, whole genome shotgun sequence (50064 bp)
Overview 1 RT 1: 34413-38800 bp Neighborhood of RT #1 [34413, 38823] YhhI YhhI YhhI RVT-GII GIIM YhhI ECA_wecA Feature: gene Location: 34413-35195 bp Feature: domain Description: YhhI Location: 34431-34608 bp Feature: domain Description: YhhI Location: 34 4 31-34 608 bp Feature: domain Description: YhhI Location: 34674-35013 bp Feature: domain Description: YhhI Location: 34 674 -35013 bp Feature: domain Description: YhhI Location: 35064-35169 bp Feature: domain Description: YhhI Location: 35064 -35169 bp Feature: gene Location: 35385-35654 bp Feature: gene Location: 35786-36979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35933-36590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35933-36590 bp Feature: domain Description: GIIM Note: maturase Location: 36671-36893 bp Feature: domain Description: GIIM Note: maturase Location: 36671-36893 bp Feature: gene Location: 37062-37274 bp Feature: domain Description: YhhI Location: 37068-37191 bp Feature: domain Description: YhhI Location: 37068-37191 bp Feature: gene Location: 37744-38823 bp Feature: domain Description: ECA_wecA Location: 37768-38800 bp Feature: domain Description: ECA_wecA Location: 37768-38800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388), ECA_wecA (TIGR02380)

Seq: SYUZ01000078.1 Vibrio sp. F13 strain 10N.222.55.E12 10N.222.55.E12_contig_77, whole genome shotgun sequence (1778 bp)
Overview 1 RT 1: 3-1421 bp Neighborhood of RT #1 [3, 1421] RVT_N RVT-GII Feature: gene Location: 3-1202 bp Feature: domain Description: RVT_N Location: 210-453 bp Feature: domain Description: RVT_N Location: 210-45 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498-1125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498-1125 bp Feature: gene Location: 1278-1421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII