myRT

myRT report for GCA_005146445.1_ASM514644v1

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Seq: SYUU01000117.1 Vibrio kanaloae strain 10N.261.48.E7 10N.261.48.E7_contig_116, whole genome shotgun sequence (1899 bp)
Overview 1 RT 1: 2-1729 bp Neighborhood of RT #1 [2, 1896] RVT-GII GIIM 3a0107s01c2 Feature: gene Location: 2-589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-80 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-80 bp Feature: domain Description: GIIM Note: maturase Location: 137-365 bp Feature: domain Description: GIIM Note: maturase Location: 1 37-365 bp Feature: gene Location: 885-1175 bp Feature: gene Location: 1156-1896 bp Feature: domain Description: 3a0107s01c2 Location: 1474-1729 bp Feature: domain Description: 3a01 07s01 c2 Location: 1 474-1 729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 3a0107s01c2 (TIGR00972), RVT-GII, GIIM (pfam08388)

Seq: SYUU01000014.1 Vibrio kanaloae strain 10N.261.48.E7 10N.261.48.E7_contig_13, whole genome shotgun sequence (157787 bp)
Overview 1 RT 1: 69885-74623 bp Neighborhood of RT #1 [69885, 74640] TIGR02646 COG3950 RVT-Retrons sigma70-ECF AlpA Feature: gene Location: 69885-70658 bp Feature: domain Description: TIGR02646 Location: 69957-70488 bp Feature: domain Description: TIGR02 646 Location: 69957-70488 bp Feature: gene Location: 70645-72270 bp Feature: domain Description: COG3950 Location: 70828-72199 bp Feature: domain Description: COG3950 Location: 7082 8-72 199 bp Feature: gene Location: 72263-73207 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 72362-72959 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 72 362 -72 959 bp Feature: gene Location: 73603-74295 bp Feature: domain Description: sigma70-ECF Location: 73666-74278 bp Feature: domain Description: sigma70-ECF Location: 73666-742 78 bp Feature: gene Location: 74416-74640 bp Feature: domain Description: AlpA Location: 74455-74623 bp Feature: domain Description: AlpA Location: 74455-7462 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, sigma70-ECF (TIGR02937), AlpA (COG3311)

Seq: SYUU01000089.1 Vibrio kanaloae strain 10N.261.48.E7 10N.261.48.E7_contig_88, whole genome shotgun sequence (1239 bp)
Overview 1 RT 1: 330-1239 bp Neighborhood of RT #1 [330, 1238] RVT_N RVT-GII Feature: gene Location: 330-1238 bp Feature: RT Description: RVT_N Location: 384-627 bp Feature: RT Description: RVT_N Location: 3 84-627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672-1239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672-123 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: SYUU01000092.1 Vibrio kanaloae strain 10N.261.48.E7 10N.261.48.E7_contig_91, whole genome shotgun sequence (16652 bp)
Overview 1 RT 1: 14600-16427 bp Neighborhood of RT #1 [14600, 16651] RVT-GII GIIM Feature: gene Location: 14600-14728 bp Feature: gene Location: 15380-15541 bp Feature: gene Location: 16064-16651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16067-16142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16067-1614 2 bp Feature: domain Description: GIIM Note: maturase Location: 16199-16427 bp Feature: domain Description: GIIM Note: maturase Location: 16199-164 27 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)