myRT

myRT report for GCA_005146495.1_ASM514649v1

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Seq: SYVF01000154.1 Vibrio sp. F13 strain 10N.222.54.B8 10N.222.54.B8_contig_153, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 212-2343 bp Neighborhood of RT #1 [212, 2344] group_II_RT_mat RVT-GII RVT-GII Feature: gene Location: 212-368 bp Ori: TKF62473.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 236-362 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 236-362 bp Feature: gene Location: 1102-1316 bp Ori: TKF62474.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1162-1312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 62-1 31 2 bp Feature: gene Location: 2058-2344 bp Ori: TKF62475.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2061-2343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2061 -2343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: SYVF01000045.1 Vibrio sp. F13 strain 10N.222.54.B8 10N.222.54.B8_contig_44, whole genome shotgun sequence (59568 bp)
Overview 1 RT 1: 3603-8459 bp Neighborhood of RT #1 [3603, 8488] YegP RVT-UG12 bcp PerM Feature: gene Location: 3603-3830 bp Ori: TKF69781.1 Feature: domain Description: YegP Location: 3663-3807 bp Feature: domain Description: YegP Location: 3663-3807 bp Feature: gene Location: 4344-4916 bp Feature: gene Location: 5142-6752 bp Ori: TKF69783.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 5511-5937 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 5511-5937 bp Feature: gene Location: 7126-7263 bp Ori: TKF69784.1 Feature: domain Description: bcp Location: 7129-7255 bp Feature: domain Description: bcp Location: 712 9-72 55 bp Feature: gene Location: 7412-8488 bp Ori: TKF69785.1 Feature: domain Description: PerM Location: 7424-8459 bp Feature: domain Description: PerM Location: 742 4-8459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YegP (COG3422), RVT-UG12, bcp (PRK09437), PerM (COG0628)

Seq: SYVF01000025.1 Vibrio sp. F13 strain 10N.222.54.B8 10N.222.54.B8_contig_24, whole genome shotgun sequence (40182 bp)
Overview 1 RT 1: 13335-19116 bp Neighborhood of RT #1 [13335, 19554] COG4584 COG4584 RVT_N RVT-GII GIIM COG3547 PRK10387 Feature: gene Location: 13335-14867 bp Ori: TKF72342.1 Feature: domain Description: COG4584 Location: 13482-14238 bp Feature: domain Description: COG4584 Location: 13 482-1423 8 bp Feature: domain Description: COG4584 Location: 14325-14760 bp Feature: domain Description: COG4584 Location: 143 25-14760 bp Feature: gene Location: 15188-15384 bp Feature: gene Location: 15300-16931 bp Ori: TKF72343.1 Gene: ltrA Feature: domain Description: RVT_N Location: 15507-15750 bp Feature: domain Description: RVT_N Location: 15507-15750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15795-16422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15795-16422 bp Feature: domain Description: GIIM Note: maturase Location: 16482-16707 bp Feature: domain Description: GIIM Note: maturase Location: 16482-16707 bp Feature: gene Location: 17081-18121 bp Ori: TKF72344.1 Feature: domain Description: COG3547 Location: 17099-18074 bp Feature: domain Description: COG3 547 Location: 17099-18074 bp Feature: gene Location: 18945-19554 bp Gene: grxB Feature: domain Description: PRK10387 Location: 18948-19116 bp Feature: domain Description: PRK103 87 Location: 18948-19116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), PRK10387 (glutaredoxin 2; Provisional)

Seq: SYVF01000015.1 Vibrio sp. F13 strain 10N.222.54.B8 10N.222.54.B8_contig_14, whole genome shotgun sequence (157375 bp)
Overview 1 RT 1: 29132-32417 bp 2 RT 2: 74266-79830 bp Neighborhood of RT #1 [29132, 32425] TAS_TAS_TAS_TIGR02293 RVT-GII GIIM Mrr_cat zf-C4_Topoisom Neighborhood of RT #2 [74266, 79830] PRK10276 umuC RVT_N RVT-GII GIIM Feature: gene Location: 29132-29746 bp Feature: gene Location: 29915-30055 bp Feature: domain Description: TAS_TAS_TAS_TIGR02293 Location: 29921-30053 bp Feature: domain Description: TAS_TAS_TAS_TIGR02293 Location: 29921-30053 bp Feature: gene Location: 30138-30776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30153-30273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30153-30273 bp Feature: domain Description: GIIM Note: maturase Location: 30333-30558 bp Feature: domain Description: GIIM Note: maturase Location: 30333-30558 bp Feature: gene Location: 31001-31272 bp Feature: gene Location: 31604-32425 bp Ori: TKF73427.1 Feature: domain Description: Mrr_cat Location: 31904-32234 bp Feature: domain Description: Mrr_cat Location: 31904 -32234 bp Feature: domain Description: zf-C4_Topoisom Location: 32309-32417 bp Feature: domain Description: zf-C4 _Topoisom Location: 32309-324 17 bp Feature: gene Location: 74266-74676 bp Ori: TKF73464.1 Feature: domain Description: PRK10276 Location: 74284-74647 bp Feature: domain Description: PRK10276 Location: 74 284 -74 64 7 bp Feature: gene Location: 74676-75929 bp Ori: TKF73465.1 Feature: domain Description: umuC Location: 74679-75921 bp Feature: domain Description: umuC Location: 74 679-75921 bp Feature: gene Location: 76139-77611 bp Ori: TKF73533.1 Gene: ltrA Feature: domain Description: RVT_N Location: 76187-76430 bp Feature: domain Description: RVT_N Location: 76187-764 30 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76475-77102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 764 75-77102 bp Feature: domain Description: GIIM Note: maturase Location: 77159-77387 bp Feature: domain Description: GIIM Note: maturase Location: 77159-77387 bp Feature: gene Location: 78675-79358 bp Feature: gene Location: 79348-79830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TAS_TAS_TAS_TIGR02293, RVT-GII, GIIM (pfam08388), Mrr_cat (pfam04471), zf-C4_Topoisom (pfam01396), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), RVT_N (pfam13655)

Seq: SYVF01000020.1 Vibrio sp. F13 strain 10N.222.54.B8 10N.222.54.B8_contig_19, whole genome shotgun sequence (46307 bp)
Overview 1 RT 1: 31712-36105 bp Neighborhood of RT #1 [31712, 36116] trans_reg_C RVT-DGRs Big_1 Big_1 DUF1566 Feature: gene Location: 31712-31954 bp Feature: gene Location: 32072-32365 bp Ori: TKF72836.1 Feature: domain Description: trans_reg_C Location: 32135-32354 bp Feature: domain Description: trans_reg_C Location: 32135 -3235 4 bp Feature: gene Location: 32573-32842 bp Ori: TKF72847.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32585-32837 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 325 85 -32837 bp Feature: gene Location: 33214-33408 bp Feature: gene Location: 33504-36116 bp Ori: TKF72837.1 Feature: domain Description: Big_1 Location: 35046-35235 bp Feature: domain Description: Big_1 Location: 35 046-35 235 bp Feature: domain Description: Big_1 Location: 35349-35526 bp Feature: domain Description: Big_1 Location: 35 349-35 5 26 bp Feature: domain Description: DUF1566 Location: 35838-36105 bp Feature: domain Description: DUF15 66 Location: 35 838-36105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), RVT-DGRs, Big_1 (pfam02369), DUF1566 (pfam07603)

Seq: SYVF01000042.1 Vibrio sp. F13 strain 10N.222.54.B8 10N.222.54.B8_contig_41, whole genome shotgun sequence (41410 bp)
Overview 1 RT 1: 69-3111 bp Neighborhood of RT #1 [69, 3111] RVT-GII GIIM PRK10100 Feature: gene Location: 69-257 bp Feature: gene Location: 546-1856 bp Ori: TKF70437.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 762-1374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76 2-1374 bp Feature: domain Description: GIIM Note: maturase Location: 1428-1632 bp Feature: domain Description: GIIM Note: maturase Location: 1428-16 32 bp Feature: gene Location: 1950-2618 bp Ori: TKF70398.1 Feature: domain Description: PRK10100 Location: 1962-2595 bp Feature: domain Description: PRK10100 Location: 196 2-2595 bp Feature: gene Location: 2791-3111 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK10100 (transcriptional regulator CsgD)