myRT

myRT report for GCA_005146515.1_ASM514651v1

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Seq: SYUV01000014.1 Vibrio kanaloae strain 10N.261.46.F4 10N.261.46.F4_contig_13, whole genome shotgun sequence (114544 bp)
Overview 1 RT 1: 105656-112968 bp Neighborhood of RT #1 [105656, 112994] YckC RVT_N RVT-GII GIIM sulfatase_like sulfatase_like Phn_aa_oxid Feature: gene Location: 105656-106132 bp Feature: domain Description: YckC Location: 105662-106121 bp Feature: domain Description: YckC Location: 1 05662-1 061 21 bp Feature: gene Location: 106783-106944 bp Feature: gene Location: 107483-108961 bp Feature: domain Description: RVT_N Location: 107537-107780 bp Feature: domain Description: RVT_N Location: 1 07537-1 07780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107825-108452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 07825-1 08452 bp Feature: domain Description: GIIM Note: maturase Location: 108509-108737 bp Feature: domain Description: GIIM Note: maturase Location: 1 08509-1 08737 bp Feature: gene Location: 109652-111787 bp Feature: domain Description: sulfatase_like Location: 109766-110147 bp Feature: domain Description: sulfatase_like Location: 1 09766-1 1 01 47 bp Feature: domain Description: sulfatase_like Location: 110243-110606 bp Feature: domain Description: sulfatase_like Location: 1 1 0243-1 1 0606 bp Feature: gene Location: 112023-112994 bp Feature: domain Description: Phn_aa_oxid Location: 112047-112968 bp Feature: domain Description: Phn_aa_oxid Location: 1 1 2047-1 1 2968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YckC (COG1714), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), sulfatase_like (cd16156), Phn_aa_oxid (TIGR03329)

Seq: SYUV01000019.1 Vibrio kanaloae strain 10N.261.46.F4 10N.261.46.F4_contig_18, whole genome shotgun sequence (95429 bp)
Overview 1 RT 1: 2-4779 bp Neighborhood of RT #1 [2, 4779] PHA02517 RVT-UG5 MhpC Feature: gene Location: 2-157 bp Feature: domain Description: PHA02517 Location: 5-137 bp Feature: domain Description: PHA02 517 Location: 5-137 bp Feature: gene Location: 448-2340 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 970-1495 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 970-1495 bp Feature: gene Location: 2663-3535 bp Feature: domain Description: MhpC Location: 2768-3515 bp Feature: domain Description: MhpC Location: 2 768-3515 bp Feature: gene Location: 3931-4779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-UG5, MhpC (COG0596)

Seq: SYUV01000033.1 Vibrio kanaloae strain 10N.261.46.F4 10N.261.46.F4_contig_32, whole genome shotgun sequence (89711 bp)
Overview 1 RT 1: 77649-82929 bp Neighborhood of RT #1 [77649, 82929] Hypoth_Ymh AAA_15 AAA_15 RVT-Retrons COG4190 Feature: gene Location: 77649-78449 bp Feature: domain Description: Hypoth_Ymh Location: 78069-78429 bp Feature: domain Description: Hypoth_Ymh Location: 78069-78429 bp Feature: gene Location: 78597-80714 bp Feature: domain Description: AAA_15 Location: 78600-79017 bp Feature: domain Description: AAA_15 Location: 78600-79017 bp Feature: domain Description: AAA_15 Location: 79152-79581 bp Feature: domain Description: AAA_15 Location: 79152-79581 bp Feature: gene Location: 80890-81990 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81031-81589 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8103 1-81589 bp Feature: gene Location: 82157-82519 bp Feature: domain Description: COG4190 Location: 82178-82499 bp Feature: domain Description: COG4190 Location: 82178-82499 bp Feature: gene Location: 82720-82929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hypoth_Ymh (pfam09509), AAA_15 (pfam13175), RVT-Retrons, COG4190 (Predicted transcriptional regulator )

Seq: SYUV01000069.1 Vibrio kanaloae strain 10N.261.46.F4 10N.261.46.F4_contig_68, whole genome shotgun sequence (40955 bp)
Overview 1 RT 1: 37717-40934 bp Neighborhood of RT #1 [37717, 40954] PRK06084 RVT-Retrons PHA02517 Feature: gene Location: 37717-38985 bp Feature: domain Description: PRK06084 Location: 37720-38983 bp Feature: domain Description: PRK06084 Location: 37720-38983 bp Feature: gene Location: 39062-39310 bp Feature: gene Location: 39437-40411 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39578-40139 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39578-4 0139 bp Feature: gene Location: 40820-40954 bp Feature: domain Description: PHA02517 Location: 40832-40934 bp Feature: domain Description: PHA02517 Location: 4 0832-4 0934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06084 (bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase), RVT-Retrons, PHA02517 (putative transposase OrfB; Reviewed)