myRT

myRT report for GCA_005146585.1_ASM514658v1

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Seq: SYVI01000001.1 Vibrio sp. F13 strain 10N.222.49.C1 10N.222.49.C1_contig_0, whole genome shotgun sequence (2441 bp)
Overview 1 RT 1: 1-1936 bp Neighborhood of RT #1 [1, 1936] RVT-GII RVT-GII GIIM Feature: gene Location: 1-1830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151-601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 -601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1204-1375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 204-1 375 bp Feature: domain Description: GIIM Note: maturase Location: 1429-1633 bp Feature: domain Description: GIIM Note: maturase Location: 1 429-1 633 bp Feature: gene Location: 1676-1936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SYVI01000007.1 Vibrio sp. F13 strain 10N.222.49.C1 10N.222.49.C1_contig_6, whole genome shotgun sequence (85786 bp)
Overview 1 RT 1: 17881-26489 bp Neighborhood of RT #1 [17881, 26512] RVT-GII ThrE ThrE ThrE Feature: gene Location: 17881-22038 bp Feature: gene Location: 22040-24211 bp Feature: gene Location: 24189-24389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24231-24381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 42 31-2 4381 bp Feature: gene Location: 24721-24966 bp Feature: gene Location: 25268-26512 bp Feature: domain Description: ThrE Location: 25379-25583 bp Feature: domain Description: ThrE Location: 2 5379-2 5583 bp Feature: domain Description: ThrE Location: 25640-26039 bp Feature: domain Description: ThrE Location: 2 5640-2 6039 bp Feature: domain Description: ThrE Location: 26087-26489 bp Feature: domain Description: ThrE Location: 2 6087-2 6489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ThrE (pfam06738)

Seq: SYVI01000008.1 Vibrio sp. F13 strain 10N.222.49.C1 10N.222.49.C1_contig_7, whole genome shotgun sequence (45352 bp)
Overview 1 RT 1: 14-12502 bp Neighborhood of RT #1 [14, 14226] rve_3 RVT-UG4 DDE_Tnp_1 RVT-GII GIIM TcfC Feature: gene Location: 14-193 bp Feature: domain Description: rve_3 Location: 53-137 bp Feature: domain Description: rve_3 Location: 53 -13 7 bp Feature: gene Location: 511-1011 bp Feature: gene Location: 1286-2263 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1646-2099 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1646-2099 bp Feature: gene Location: 2399-5254 bp Feature: gene Location: 5703-6161 bp Feature: gene Location: 7709-8482 bp Feature: domain Description: DDE_Tnp_1 Location: 7928-8456 bp Feature: domain Description: DDE_Tnp_1 Location: 7928-8456 bp Feature: gene Location: 8672-8941 bp Feature: gene Location: 9073-10266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9220-9877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9220-9877 bp Feature: domain Description: GIIM Note: maturase Location: 9958-10180 bp Feature: domain Description: GIIM Note: maturase Location: 9958-10180 bp Feature: gene Location: 11015-11512 bp Feature: gene Location: 11536-14226 bp Feature: domain Description: TcfC Location: 12313-12502 bp Feature: domain Description: TcfC Location: 123 13 -12502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), RVT-UG4, DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), TcfC (pfam16967)