myRT

myRT report for GCA_005146605.1_ASM514660v1

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Seq: SYVM01000129.1 Vibrio sp. F13 strain 10N.222.48.A9 10N.222.48.A9_contig_128, whole genome shotgun sequence (6213 bp)
Overview 1 RT 1: 647-5642 bp Neighborhood of RT #1 [647, 5866] PRK09061 Peptidase_M19 RVT_N RVT-GII RVT-GII GIIM GIIM Feature: gene Location: 647-2200 bp Feature: domain Description: PRK09061 Location: 686-2198 bp Feature: domain Description: PRK09061 Location: 686-21 98 bp Feature: gene Location: 2539-3702 bp Feature: domain Description: Peptidase_M19 Location: 2755-3691 bp Feature: domain Description: Peptidase_M1 9 Location: 2755-3691 bp Feature: gene Location: 4391-4996 bp Feature: domain Description: RVT_N Location: 4445-4688 bp Feature: domain Description: RVT_N Location: 4445-4688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4733-4988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4733-4988 bp Feature: gene Location: 4989-5594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5004-5358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5004-5358 bp Feature: domain Description: GIIM Note: maturase Location: 5418-5511 bp Feature: domain Description: GIIM Note: maturase Location: 541 8-551 1 bp Feature: gene Location: 5504-5866 bp Feature: domain Description: GIIM Note: maturase Location: 5510-5642 bp Feature: domain Description: GIIM Note: maturase Location: 551 0-5642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09061 (D-glutamate deacylase; Validated), Peptidase_M19 (pfam01244), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: SYVM01000141.1 Vibrio sp. F13 strain 10N.222.48.A9 10N.222.48.A9_contig_140, whole genome shotgun sequence (2073 bp)
Overview 1 RT 1: 1-1845 bp Neighborhood of RT #1 [1, 1845] YhhI RVT-GII GIIM Feature: gene Location: 1-156 bp Feature: domain Description: YhhI Location: 7-130 bp Feature: domain Description: YhhI Location: 7-130 bp Feature: gene Location: 239-1564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 518-1175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 518-1175 bp Feature: domain Description: GIIM Note: maturase Location: 1256-1478 bp Feature: domain Description: GIIM Note: maturase Location: 12 56-1478 bp Feature: gene Location: 1609-1845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: SYVM01000147.1 Vibrio sp. F13 strain 10N.222.48.A9 10N.222.48.A9_contig_146, whole genome shotgun sequence (2168 bp)
Overview 1 RT 1: 205-1832 bp Neighborhood of RT #1 [205, 2056] RVT_N RVT-GII GIIM Feature: gene Location: 205-360 bp Feature: gene Location: 584-2056 bp Feature: domain Description: RVT_N Location: 632-875 bp Feature: domain Description: RVT_N Location: 63 2-875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 920-1547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 920-1547 bp Feature: domain Description: GIIM Note: maturase Location: 1607-1832 bp Feature: domain Description: GIIM Note: maturase Location: 1607-183 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: SYVM01000016.1 Vibrio sp. F13 strain 10N.222.48.A9 10N.222.48.A9_contig_15, whole genome shotgun sequence (75693 bp)
Overview 1 RT 1: 47674-54759 bp Neighborhood of RT #1 [47674, 54759] RVT-GII Feature: gene Location: 47674-47937 bp Feature: gene Location: 47944-48120 bp Feature: gene Location: 48251-48451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48293-48443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 8293-4 84 4 3 bp Feature: gene Location: 48429-50600 bp Feature: gene Location: 50602-54759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SYVM01000018.1 Vibrio sp. F13 strain 10N.222.48.A9 10N.222.48.A9_contig_17, whole genome shotgun sequence (5418 bp)
Overview 1 RT 1: 2170-5333 bp Neighborhood of RT #1 [2170, 5416] SSL2 RVT_N RVT-GII Feature: gene Location: 2170-3549 bp Feature: domain Description: SSL2 Location: 2176-3403 bp Feature: domain Description: SSL2 Location: 2176-3403 bp Feature: gene Location: 4070-4213 bp Feature: gene Location: 4448-5416 bp Feature: domain Description: RVT_N Location: 4496-4739 bp Feature: domain Description: RVT_N Location: 4496-4739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4784-5333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4784-5 333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SSL2 (COG1061), RVT_N (pfam13655), RVT-GII

Seq: SYVM01000176.1 Vibrio sp. F13 strain 10N.222.48.A9 10N.222.48.A9_contig_175, whole genome shotgun sequence (207 bp)
Overview 1 RT 1: 3-129 bp Neighborhood of RT #1 [3, 206] RVT-GII Feature: gene Location: 3-206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15-129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15-129 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SYVM01000019.1 Vibrio sp. F13 strain 10N.222.48.A9 10N.222.48.A9_contig_18, whole genome shotgun sequence (1261 bp)
Overview 1 RT 1: 3-1227 bp Neighborhood of RT #1 [3, 1227] RVT_N RVT-GII Feature: gene Location: 3-845 bp Feature: domain Description: RVT_N Location: 210-450 bp Feature: domain Description: RVT_N Location: 210-450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498-843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498-843 bp Feature: gene Location: 979-1227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: SYVM01000023.1 Vibrio sp. F13 strain 10N.222.48.A9 10N.222.48.A9_contig_22, whole genome shotgun sequence (12495 bp)
Overview 1 RT 1: 871-4777 bp Neighborhood of RT #1 [871, 5070] RVT_N RVT-GII GIIM DUF2971 Feature: gene Location: 871-1461 bp Feature: gene Location: 1745-1888 bp Feature: gene Location: 2123-3595 bp Feature: domain Description: RVT_N Location: 2171-2414 bp Feature: domain Description: RVT_N Location: 2171-2414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2459-3086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2459-308 6 bp Feature: domain Description: GIIM Note: maturase Location: 3146-3371 bp Feature: domain Description: GIIM Note: maturase Location: 3146-3371 bp Feature: gene Location: 3643-3816 bp Feature: gene Location: 4021-5070 bp Feature: domain Description: DUF2971 Location: 4471-4777 bp Feature: domain Description: DUF2971 Location: 4471-4777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF2971 (pfam11185)

Seq: SYVM01000032.1 Vibrio sp. F13 strain 10N.222.48.A9 10N.222.48.A9_contig_31, whole genome shotgun sequence (1907 bp)
Overview 1 RT 1: 202-1632 bp Neighborhood of RT #1 [202, 1856] RVT-GII GIIM Feature: gene Location: 202-333 bp Feature: gene Location: 543-1856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 762-1374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 762-1374 bp Feature: domain Description: GIIM Note: maturase Location: 1428-1632 bp Feature: domain Description: GIIM Note: maturase Location: 1428-1632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SYVM01000040.1 Vibrio sp. F13 strain 10N.222.48.A9 10N.222.48.A9_contig_39, whole genome shotgun sequence (185537 bp)
Overview 1 RT 1: 104051-112252 bp Neighborhood of RT #1 [104051, 112287] PRK06084 RVT-GII Intron_maturas2 HNHc PRK05658 dnaG Feature: gene Location: 104051-105319 bp Feature: domain Description: PRK06084 Location: 104054-105317 bp Feature: domain Description: PRK06084 Location: 10 4054-10 5317 bp Feature: gene Location: 105396-105617 bp Feature: gene Location: 105729-107597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105999-106818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10 5999-10 6818 bp Feature: domain Description: Intron_maturas2 Location: 106923-107268 bp Feature: domain Description: Intron_maturas2 Location: 10 6923-10 7268 bp Feature: domain Description: HNHc Note: nucleases Location: 107367-107523 bp Feature: domain Description: HNHc Note: nucleases Location: 10 7367-10 7523 bp Feature: gene Location: 108592-110436 bp Feature: domain Description: PRK05658 Location: 108598-110434 bp Feature: domain Description: PRK05658 Location: 10 8598-110 434 bp Feature: gene Location: 110536-112287 bp Feature: domain Description: dnaG Location: 110545-112252 bp Feature: domain Description: dnaG Location: 110 545-112252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06084 (bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK05658 (RNA polymerase sigma factor RpoD; Validated), dnaG (TIGR01391)

Seq: SYVM01000085.1 Vibrio sp. F13 strain 10N.222.48.A9 10N.222.48.A9_contig_84, whole genome shotgun sequence (23800 bp)
Overview 1 RT 1: 9068-13455 bp Neighborhood of RT #1 [9068, 13466] trans_reg_C RVT-DGRs Big_1 Big_1 DUF1566 Feature: gene Location: 9068-9310 bp Feature: gene Location: 9428-9721 bp Feature: domain Description: trans_reg_C Location: 9491-9710 bp Feature: domain Description: trans_reg_C Location: 9491-9710 bp Feature: gene Location: 10019-10198 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10022-10193 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10022-10193 bp Feature: gene Location: 10462-10764 bp Feature: gene Location: 10860-13466 bp Feature: domain Description: Big_1 Location: 12402-12591 bp Feature: domain Description: Big_1 Location: 12402-12591 bp Feature: domain Description: Big_1 Location: 12705-12882 bp Feature: domain Description: Big_1 Location: 12705-12882 bp Feature: domain Description: DUF1566 Location: 13194-13455 bp Feature: domain Description: DUF1566 Location: 13194-13455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), RVT-DGRs, Big_1 (pfam02369), DUF1566 (pfam07603)

Seq: SYVM01000090.1 Vibrio sp. F13 strain 10N.222.48.A9 10N.222.48.A9_contig_89, whole genome shotgun sequence (1566 bp)
Overview 1 RT 1: 37-1123 bp Neighborhood of RT #1 [37, 1350] RVT-GII GIIM Feature: gene Location: 37-1350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256-868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256-868 bp Feature: domain Description: GIIM Note: maturase Location: 922-1123 bp Feature: domain Description: GIIM Note: maturase Location: 922-112 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)