myRT

myRT report for GCA_005146655.1_ASM514665v1

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Seq: SYVP01000116.1 Vibrio breoganii strain 10N.222.46.E9 10N.222.46.E9_contig_115, whole genome shotgun sequence (11614 bp)
Overview 1 RT 1: 45-4753 bp Neighborhood of RT #1 [45, 4788] COG3950 RVT-Retrons DUF5062 TauE Feature: gene Location: 45-200 bp Feature: gene Location: 782-2425 bp Feature: domain Description: COG3950 Location: 989-2351 bp Feature: domain Description: COG3950 Location: 989-2351 bp Feature: gene Location: 2418-3338 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2520-3099 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2520-3099 bp Feature: gene Location: 3687-3947 bp Feature: domain Description: DUF5062 Location: 3705-3945 bp Feature: domain Description: DUF5062 Location: 3705-3945 bp Feature: gene Location: 4069-4788 bp Feature: domain Description: TauE Location: 4096-4753 bp Feature: domain Description: TauE Location: 4096-4753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, DUF5062 (pfam16691), TauE (pfam01925)

Seq: SYVP01000126.1 Vibrio breoganii strain 10N.222.46.E9 10N.222.46.E9_contig_125, whole genome shotgun sequence (14447 bp)
Overview 1 RT 1: 97-1769 bp Neighborhood of RT #1 [97, 1769] RVT-GII GIIM Feature: gene Location: 97-1344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298-955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 98-955 bp Feature: domain Description: GIIM Note: maturase Location: 1036-1255 bp Feature: domain Description: GIIM Note: maturase Location: 1036-12 55 bp Feature: gene Location: 1422-1607 bp Feature: gene Location: 1614-1769 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SYVP01000129.1 Vibrio breoganii strain 10N.222.46.E9 10N.222.46.E9_contig_128, whole genome shotgun sequence (11426 bp)
Overview 1 RT 1: 7605-10545 bp Neighborhood of RT #1 [7605, 10601] RVT-GII GIIM DDE_Tnp_1_assoc Feature: gene Location: 7605-7865 bp Feature: gene Location: 8148-8279 bp Feature: gene Location: 8478-9791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8697-9312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8697-93 12 bp Feature: domain Description: GIIM Note: maturase Location: 9363-9564 bp Feature: domain Description: GIIM Note: maturase Location: 93 63 -9564 bp Feature: gene Location: 9818-9961 bp Feature: gene Location: 10281-10601 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 10305-10545 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 103 05-10545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1_assoc (pfam13808)

Seq: SYVP01000131.1 Vibrio breoganii strain 10N.222.46.E9 10N.222.46.E9_contig_130, whole genome shotgun sequence (290 bp)
Overview 1 RT 1: 1-289 bp Neighborhood of RT #1 [1, 288] RVT-GII Feature: gene Location: 1-288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 -289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SYVP01000005.1 Vibrio breoganii strain 10N.222.46.E9 10N.222.46.E9_contig_4, whole genome shotgun sequence (2090 bp)
Overview 1 RT 1: 19-2089 bp Neighborhood of RT #1 [19, 2089] RVT-GII GIIM Feature: gene Location: 19-1353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232-853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232-85 3 bp Feature: domain Description: GIIM Note: maturase Location: 901-1123 bp Feature: domain Description: GIIM Note: maturase Location: 901-1123 bp Feature: gene Location: 1516-1743 bp Feature: gene Location: 1943-2089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SYVP01000073.1 Vibrio breoganii strain 10N.222.46.E9 10N.222.46.E9_contig_72, whole genome shotgun sequence (43261 bp)
Overview 1 RT 1: 24049-30206 bp Neighborhood of RT #1 [24049, 30331] Integrase_1 RVT_N RVT-GII GIIM CarboxypepD_reg CarboxypepD_reg Feature: gene Location: 24049-25062 bp Feature: domain Description: Integrase_1 Location: 24490-24862 bp Feature: domain Description: Integrase_1 Location: 24490-2486 2 bp Feature: gene Location: 26208-26405 bp Feature: gene Location: 26424-28013 bp Feature: domain Description: RVT_N Location: 26589-26832 bp Feature: domain Description: RVT_N Location: 26 589-26 832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26877-27504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26 877-27504 bp Feature: domain Description: GIIM Note: maturase Location: 27564-27789 bp Feature: domain Description: GIIM Note: maturase Location: 2756 4-27789 bp Feature: gene Location: 28031-28258 bp Feature: gene Location: 29321-30331 bp Feature: domain Description: CarboxypepD_reg Location: 29696-29864 bp Feature: domain Description: CarboxypepD_reg Location: 296 96 -2986 4 bp Feature: domain Description: CarboxypepD_reg Location: 29963-30206 bp Feature: domain Description: CarboxypepD_reg Location: 2996 3-30206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Integrase_1 (pfam12835), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), CarboxypepD_reg (pfam13620)