myRT

myRT report for GCA_005146705.1_ASM514670v1

Download annotations/find similar RTs

Seq: SYVT01000027.1 Vibrio breoganii strain 10N.222.46.A11 10N.222.46.A11_contig_26, whole genome shotgun sequence (2176 bp)
Overview 1 RT 1: 2-1928 bp Neighborhood of RT #1 [2, 2158] uraD_N-term-dom RVT-GII GIIM Feature: gene Location: 2-133 bp Feature: domain Description: uraD_N-term-dom Location: 5-122 bp Feature: domain Description: uraD_N-term-dom Location: 5-1 22 bp Feature: gene Location: 434-661 bp Feature: gene Location: 824-2158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1037-1658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 037-1 658 bp Feature: domain Description: GIIM Note: maturase Location: 1706-1928 bp Feature: domain Description: GIIM Note: maturase Location: 1 706-1 928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT uraD_N-term-dom (TIGR03212), RVT-GII, GIIM (pfam08388)

Seq: SYVT01000058.1 Vibrio breoganii strain 10N.222.46.A11 10N.222.46.A11_contig_57, whole genome shotgun sequence (3832 bp)
Overview 1 RT 1: 844-3829 bp Neighborhood of RT #1 [844, 3829] DDE_Tnp_1_assoc RVT-GII GIIM Feature: gene Location: 844-1164 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 868-1108 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 868-1108 bp Feature: gene Location: 1462-1626 bp Feature: gene Location: 1653-2966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1872-2487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1872 -2 487 bp Feature: domain Description: GIIM Note: maturase Location: 2538-2739 bp Feature: domain Description: GIIM Note: maturase Location: 2 538-2 739 bp Feature: gene Location: 3176-3307 bp Feature: gene Location: 3590-3829 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1_assoc (pfam13808)

Seq: SYVT01000084.1 Vibrio breoganii strain 10N.222.46.A11 10N.222.46.A11_contig_83, whole genome shotgun sequence (34914 bp)
Overview 1 RT 1: 19737-26418 bp Neighborhood of RT #1 [19737, 26435] YiiD_C INT_C_like_1 RVT_N RVT-GII GIIM HpaA GlxA RhaT Feature: gene Location: 19737-20216 bp Feature: domain Description: YiiD_C Location: 19788-20205 bp Feature: domain Description: YiiD_C Location: 19788-20205 bp Feature: gene Location: 20704-21981 bp Feature: domain Description: INT_C_like_1 Location: 21400-21925 bp Feature: domain Description: INT_C_like_1 Location: 21400-21925 bp Feature: gene Location: 22584-24215 bp Feature: RT Description: RVT_N Location: 22791-23034 bp Feature: RT Description: RVT_N Location: 22791-23 03 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23079-23706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 079-23 706 bp Feature: domain Description: GIIM Note: maturase Location: 23766-23991 bp Feature: domain Description: GIIM Note: maturase Location: 23 766-23 991 bp Feature: gene Location: 24724-25437 bp Feature: domain Description: HpaA Location: 24754-24928 bp Feature: domain Description: HpaA Location: 24754-24928 bp Feature: domain Description: GlxA Location: 25105-25426 bp Feature: domain Description: GlxA Location: 25105-25426 bp Feature: gene Location: 25539-26435 bp Feature: domain Description: RhaT Location: 25572-26418 bp Feature: domain Description: RhaT Location: 25572-26418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YiiD_C (pfam09500), INT_C_like_1 (cd01184), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HpaA (TIGR02297), GlxA (COG4977), RhaT (TIGR00776)