myRT

myRT report for GCA_005146725.1_ASM514672v1

Download annotations/find similar RTs

Seq: SYVH01000015.1 Vibrio kanaloae strain 10N.222.51.B7 10N.222.51.B7_contig_14, whole genome shotgun sequence (109922 bp)
Overview 1 RT 1: 70851-75781 bp Neighborhood of RT #1 [70851, 76962] YckC RVT_N RVT-GII GIIM sulfatase_like sulfatase_like Feature: gene Location: 70851-71327 bp Feature: domain Description: YckC Location: 70854-71316 bp Feature: domain Description: YckC Location: 70854-71 31 6 bp Feature: gene Location: 71978-72139 bp Feature: gene Location: 72662-74140 bp Feature: domain Description: RVT_N Location: 72716-72959 bp Feature: domain Description: RVT_N Location: 7271 6-72959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73004-73631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73004-73631 bp Feature: domain Description: GIIM Note: maturase Location: 73688-73916 bp Feature: domain Description: GIIM Note: maturase Location: 73688-7391 6 bp Feature: gene Location: 74433-74681 bp Feature: gene Location: 74827-76962 bp Feature: domain Description: sulfatase_like Location: 74941-75322 bp Feature: domain Description: sulfatase_like Location: 74941 -75322 bp Feature: domain Description: sulfatase_like Location: 75418-75781 bp Feature: domain Description: sulfatase_like Location: 7541 8-75781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YckC (COG1714), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), sulfatase_like (cd16156)

Seq: SYVH01000041.1 Vibrio kanaloae strain 10N.222.51.B7 10N.222.51.B7_contig_40, whole genome shotgun sequence (196133 bp)
Overview 1 RT 1: 90562-98371 bp Neighborhood of RT #1 [90562, 98376] PRK09692 RVT-UG2 COG0610 RMtype1_S_StySKI-TRD2-CR2_like RMtype1_S_StySKI-TRD2-CR2_like Feature: gene Location: 90562-91818 bp Feature: domain Description: PRK09692 Location: 90577-91810 bp Feature: domain Description: PRK09692 Location: 90577-91810 bp Feature: gene Location: 91909-92106 bp Feature: gene Location: 92449-94104 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 92824-93706 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 92 82 4-93706 bp Feature: gene Location: 94162-97224 bp Feature: domain Description: COG0610 Location: 94180-96328 bp Feature: domain Description: COG0610 Location: 94180-9632 8 bp Feature: gene Location: 97228-98376 bp Feature: domain Description: RMtype1_S_StySKI-TRD2-CR2_like Location: 97522-97741 bp Feature: domain Description: RMtype1_S_StySKI-TRD2 -CR2 _like Location: 9752 2 -97741 bp Feature: domain Description: RMtype1_S_StySKI-TRD2-CR2_like Location: 97816-98371 bp Feature: domain Description: RMtype1_S_StySKI-TRD2 -CR2 _like Location: 97816-98371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG2, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RMtype1_S_StySKI-TRD2-CR2_like (cd17259)

Seq: SYVH01000046.1 Vibrio kanaloae strain 10N.222.51.B7 10N.222.51.B7_contig_45, whole genome shotgun sequence (46374 bp)
Overview 1 RT 1: 7007-12342 bp Neighborhood of RT #1 [7007, 12342] DUF1837 RVT-Retrons TIR_2 Feature: gene Location: 7007-7930 bp Feature: domain Description: DUF1837 Location: 7136-7865 bp Feature: domain Description: DUF183 7 Location: 713 6-7865 bp Feature: gene Location: 8375-9073 bp Feature: gene Location: 9218-10813 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9470-10082 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9470-10082 bp Feature: domain Description: TIR_2 Location: 10418-10802 bp Feature: domain Description: TIR_2 Location: 10418-10802 bp Feature: gene Location: 11904-12089 bp Feature: gene Location: 12160-12342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1837 (pfam08878), RVT-Retrons, TIR_2 (pfam13676)