myRT

myRT report for GCA_005217565.1_ASM521756v1

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Seq: SJCO01000001.1 Prolixibacteraceae bacterium JC036 scaffold_0, whole genome shotgun sequence (954434 bp)
Overview 1 RT 1: 1643-6700 bp Neighborhood of RT #1 [1643, 6756] RVT-GII GIIM HTH_ARSR Feature: gene Location: 1643-2650 bp Feature: gene Location: 2731-2988 bp Feature: gene Location: 3764-5077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3977-4595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3977-4595 bp Feature: domain Description: GIIM Note: maturase Location: 4637-4871 bp Feature: domain Description: GIIM Note: maturase Location: 4637-4871 bp Feature: gene Location: 5363-5950 bp Feature: gene Location: 6463-6756 bp Feature: domain Description: HTH_ARSR Location: 6511-6700 bp Feature: domain Description: HTH_ARSR Location: 651 1 -6700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_ARSR (smart00418)

Seq: SJCO01000014.1 Prolixibacteraceae bacterium JC036 scaffold_13, whole genome shotgun sequence (236957 bp)
Overview 1 RT 1: 549-3930 bp 2 RT 2: 214916-221959 bp Neighborhood of RT #1 [549, 3930] RVT-GII RVT-GII Neighborhood of RT #2 [214916, 221959] YD_repeat_2x RHS_repeat Rhs_assc_core RVT-GII Feature: gene Location: 549-698 bp Feature: gene Location: 739-981 bp Feature: gene Location: 994-2115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1270-1609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 70-1609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1714-2044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1714-2 044 bp Feature: gene Location: 2342-3259 bp Feature: gene Location: 3358-3930 bp Feature: gene Location: 214916-218482 bp Feature: domain Description: YD_repeat_2x Location: 216653-216776 bp Feature: domain Description: YD_repeat_2 x Location: 2 16653-2 16776 bp Feature: domain Description: RHS_repeat Location: 217214-217289 bp Feature: domain Description: RHS_repeat Location: 2 172 14-2 172 89 bp Feature: domain Description: Rhs_assc_core Location: 217604-217859 bp Feature: domain Description: Rhs_assc_core Location: 2 17604-2 17859 bp Feature: gene Location: 218433-218969 bp Feature: gene Location: 219182-220183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219455-220121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 19455-2 2 012 1 bp Feature: gene Location: 220298-221272 bp Feature: gene Location: 221384-221959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YD_repeat_2x (TIGR01643), RHS_repeat (pfam05593), Rhs_assc_core (TIGR03696)

Seq: SJCO01000020.1 Prolixibacteraceae bacterium JC036 scaffold_19, whole genome shotgun sequence (120038 bp)
Overview 1 RT 1: 7213-11673 bp Neighborhood of RT #1 [7213, 11693] RVT-GII UlaG HTH_ARAC Feature: gene Location: 7213-7362 bp Feature: gene Location: 7414-8181 bp Feature: gene Location: 8256-9290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8529-9153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8529-9153 bp Feature: gene Location: 9584-10741 bp Feature: domain Description: UlaG Location: 9941-10682 bp Feature: domain Description: UlaG Location: 9941-10682 bp Feature: gene Location: 10809-11693 bp Feature: domain Description: HTH_ARAC Location: 11433-11673 bp Feature: domain Description: HTH_ARAC Location: 1143 3 -11673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), RVT-GII, UlaG (COG2220)

Seq: SJCO01000022.1 Prolixibacteraceae bacterium JC036 scaffold_21, whole genome shotgun sequence (98094 bp)
Overview 1 RT 1: 42450-46730 bp Neighborhood of RT #1 [42450, 46730] HTH_XRE HA HA HA HA RVT-GII Feature: gene Location: 42450-43754 bp Feature: domain Description: HTH_XRE Location: 42552-42696 bp Feature: domain Description: HTH_XRE Location: 4 2552-4 2696 bp Feature: domain Description: HA Location: 42822-43005 bp Feature: domain Description: HA Location: 4 2822-4 3005 bp Feature: domain Description: HA Location: 43023-43200 bp Feature: domain Description: HA Location: 4 3023-4 3200 bp Feature: domain Description: HA Location: 43233-43407 bp Feature: domain Description: HA Location: 4 3233-4 34 07 bp Feature: domain Description: HA Location: 43464-43644 bp Feature: domain Description: HA Location: 4 34 64 -4 364 4 bp Feature: gene Location: 43907-44326 bp Feature: gene Location: 44346-45422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44619-45354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 619-4 5354 bp Feature: gene Location: 45537-46529 bp Feature: gene Location: 46581-46730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), HA (pfam03457), RVT-GII

Seq: SJCO01000031.1 Prolixibacteraceae bacterium JC036 scaffold_30, whole genome shotgun sequence (16395 bp)
Overview 1 RT 1: 4756-8319 bp Neighborhood of RT #1 [4756, 8319] RVT-GII InsE Feature: gene Location: 4756-5394 bp Feature: gene Location: 5410-6144 bp Feature: gene Location: 6220-7245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6499-7186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6499-7186 bp Feature: gene Location: 7425-7703 bp Feature: domain Description: InsE Location: 7431-7695 bp Feature: domain Description: InsE Location: 7431-7695 bp Feature: gene Location: 7870-8319 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963)

Seq: SJCO01000005.1 Prolixibacteraceae bacterium JC036 scaffold_4, whole genome shotgun sequence (488843 bp)
Overview 1 RT 1: 418819-423204 bp Neighborhood of RT #1 [418819, 423260] RVT-GII Imp-YgjV HTH_MARR Acetyltransf_10 Feature: gene Location: 418819-419397 bp Feature: gene Location: 419461-420507 bp Feature: gene Location: 420621-421631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420900-421560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420900-42156 0 bp Feature: gene Location: 422024-422236 bp Feature: domain Description: Imp-YgjV Location: 422036-422219 bp Feature: domain Description: Imp-YgjV Location: 422036 -422219 bp Feature: gene Location: 422253-423260 bp Feature: domain Description: HTH_MARR Location: 422376-422613 bp Feature: domain Description: HTH_MARR Location: 422376 -4226 13 bp Feature: domain Description: Acetyltransf_10 Location: 422862-423204 bp Feature: domain Description: Acetyltransf_10 Location: 42286 2-423204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Imp-YgjV (pfam10688), HTH_MARR (smart00347), Acetyltransf_10 (pfam13673)

Seq: SJCO01000009.1 Prolixibacteraceae bacterium JC036 scaffold_8, whole genome shotgun sequence (327989 bp)
Overview 1 RT 1: 141290-147296 bp Neighborhood of RT #1 [141290, 147296] Mrr_cat RVT-GII RVT-GII Feature: gene Location: 141290-141529 bp Feature: gene Location: 141545-142900 bp Feature: domain Description: Mrr_cat Location: 142346-142679 bp Feature: domain Description: Mrr_cat Location: 142346-14267 9 bp Feature: gene Location: 143456-143665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143462-143660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143462-143660 bp Feature: gene Location: 143674-144324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143887-144307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143887 -144307 bp Feature: gene Location: 144614-144829 bp Feature: gene Location: 144993-147296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mrr_cat (pfam04471), RVT-GII