myRT

myRT report for GCA_005223285.1_ASM522328v1

Download annotations/find similar RTs

Seq: SWEI01000002.1 Pseudomonas asiatica strain MY569 MY569_contig2, whole genome shotgun sequence (742245 bp)
Overview 1 RT 1: 108891-113357 bp Neighborhood of RT #1 [108891, 113357] ispH GspH RVT-UG17 SLATT_5 Feature: gene Location: 108891-109838 bp Feature: domain Description: ispH Location: 108894-109794 bp Feature: domain Description: ispH Location: 1 08894-1 09794 bp Feature: gene Location: 109973-110458 bp Feature: domain Description: GspH Location: 110066-110381 bp Feature: domain Description: GspH Location: 1 1 0066-1 1 0381 bp Feature: gene Location: 110791-111885 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 110797-111352 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 1 0797-1 1 1 352 bp Feature: gene Location: 112152-112694 bp Feature: domain Description: SLATT_5 Location: 112158-112650 bp Feature: domain Description: SLATT_5 Location: 1 1 21 58-1 1 2650 bp Feature: gene Location: 113025-113357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ispH (PRK01045), GspH (pfam12019), RVT-UG17, SLATT_5 (pfam18160)

Seq: SWEI01000020.1 Pseudomonas asiatica strain MY569 MY569_contig20, whole genome shotgun sequence (89958 bp)
Overview 1 RT 1: 10331-14062 bp Neighborhood of RT #1 [10331, 14100] RVT-GII Acetyltransf_3 DDE_Tnp_1_2 Feature: gene Location: 10331-10660 bp Feature: gene Location: 10601-10831 bp Feature: gene Location: 11004-12770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11688-12378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11688-12 378 bp Feature: gene Location: 12887-13411 bp Feature: domain Description: Acetyltransf_3 Location: 12917-13316 bp Feature: domain Description: Acetyltransf_3 Location: 12 917-13316 bp Feature: gene Location: 13660-14100 bp Feature: domain Description: DDE_Tnp_1_2 Location: 13810-14062 bp Feature: domain Description: DDE_Tnp_1_2 Location: 13810-14062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Acetyltransf_3 (pfam13302), DDE_Tnp_1_2 (pfam13586)

Seq: SWEI01000006.1 Pseudomonas asiatica strain MY569 MY569_contig6, whole genome shotgun sequence (284195 bp)
Overview 1 RT 1: 12839-17777 bp Neighborhood of RT #1 [12839, 17777] HDc DDE_Tnp_IS66_C RVT_N RVT-GII GIIM COG3436 DDE_Tnp_IS66 Feature: gene Location: 12839-13642 bp Feature: domain Description: HDc Location: 13040-13415 bp Feature: domain Description: HDc Location: 13 040-13 415 bp Feature: gene Location: 13678-13812 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 13684-13795 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 13 684-13 795 bp Feature: gene Location: 14004-15563 bp Feature: domain Description: RVT_N Location: 14007-14190 bp Feature: domain Description: RVT_N Location: 14007-14190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14235-14871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1423 5-14871 bp Feature: domain Description: GIIM Note: maturase Location: 14928-15156 bp Feature: domain Description: GIIM Note: maturase Location: 14928-15156 bp Feature: gene Location: 16038-17279 bp Feature: domain Description: COG3436 Location: 16449-16743 bp Feature: domain Description: COG3 43 6 Location: 16449-16743 bp Feature: domain Description: DDE_Tnp_IS66 Location: 16758-17076 bp Feature: domain Description: DDE_Tnp_IS66 Location: 16758-17076 bp Feature: gene Location: 17601-17777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDc (smart00471), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050)