myRT

myRT report for GCA_005233555.1_ASM523355v1

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Seq: QGAG01000003.1 Pseudomonas viridiflava strain CFBP13515 contig-100_2, whole genome shotgun sequence (156130 bp)
Overview 1 RT 1: 10529-14860 bp Neighborhood of RT #1 [10529, 14860] HNHc Mrr_cat Mrr_cat RVT-UG11 Feature: gene Location: 10529-11719 bp Ori: TKK33270.1 Feature: domain Description: HNHc Note: nucleases Location: 10583-10742 bp Feature: domain Description: HNHc Note: nucleases Location: 1 0583-1 0742 bp Feature: domain Description: Mrr_cat Location: 10769-11108 bp Feature: domain Description: Mrr_cat Location: 1 0769-1 1 1 08 bp Feature: domain Description: Mrr_cat Location: 11414-11513 bp Feature: domain Description: Mrr_cat Location: 1 1 41 4-1 1 51 3 bp Feature: gene Location: 12282-12536 bp Feature: gene Location: 12811-13578 bp Ori: TKK33272.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 12943-13396 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 2943-1 3396 bp Feature: gene Location: 14081-14593 bp Feature: gene Location: 14660-14860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), Mrr_cat (pfam04471), RVT-UG11

Seq: QGAG01000136.1 Pseudomonas viridiflava strain CFBP13515 contig-100_137, whole genome shotgun sequence (2200 bp)
Overview 1 RT 1: 50-1905 bp Neighborhood of RT #1 [50, 2030] RVT-GII GIIM TnpB_IS66 Feature: gene Location: 50-1318 bp Ori: TKK16091.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254-911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 54-911 bp Feature: domain Description: GIIM Note: maturase Location: 989-1211 bp Feature: domain Description: GIIM Note: maturase Location: 989-12 11 bp Feature: gene Location: 1725-2030 bp Ori: TKK16092.1 Feature: domain Description: TnpB_IS66 Location: 1752-1905 bp Feature: domain Description: TnpB_IS66 Location: 1752 -1905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717)

Seq: QGAG01000045.1 Pseudomonas viridiflava strain CFBP13515 contig-100_44, whole genome shotgun sequence (47556 bp)
Overview 1 RT 1: 37266-41606 bp Neighborhood of RT #1 [37266, 46582] dnaG RVT-UNC Feature: gene Location: 37266-37451 bp Feature: gene Location: 37490-37732 bp Feature: gene Location: 39008-46582 bp Ori: TKK25046.1 Feature: domain Description: dnaG Location: 39020-40271 bp Feature: domain Description: dnaG Location: 3 9020-40271 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 41036-41606 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4103 6-41606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG25/RVT-UG19/RVT-DGRs/RVT-UG10(RVT-UNC)