myRT

myRT report for GCA_005233675.1_ASM523367v1

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Seq: QFZY01000003.1 Pseudomonas viridiflava strain CFBP13507 P0603, whole genome shotgun sequence (523641 bp)
Overview 1 RT 1: 251183-255514 bp Neighborhood of RT #1 [251183, 255514] HNHc Mrr_cat Mrr_cat RVT-UG11 Feature: gene Location: 251183-252373 bp Ori: TKJ67653.1 Feature: domain Description: HNHc Note: nucleases Location: 251237-251396 bp Feature: domain Description: HNHc Note: nucleases Location: 251 237-251 396 bp Feature: domain Description: Mrr_cat Location: 251423-251762 bp Feature: domain Description: Mrr_cat Location: 251 423-251 762 bp Feature: domain Description: Mrr_cat Location: 252068-252167 bp Feature: domain Description: Mrr_cat Location: 252068-2521 67 bp Feature: gene Location: 252936-253190 bp Feature: gene Location: 253465-254232 bp Ori: TKJ67655.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 253597-254050 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 253597-254050 bp Feature: gene Location: 254735-255247 bp Feature: gene Location: 255314-255514 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), Mrr_cat (pfam04471), RVT-UG11

Seq: QFZY01000011.1 Pseudomonas viridiflava strain CFBP13507 P0611, whole genome shotgun sequence (182947 bp)
Overview 1 RT 1: 176353-180689 bp Neighborhood of RT #1 [176353, 180820] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 RVT-GII GIIM TnpB_IS66 Imm6 Feature: gene Location: 176353-177864 bp Ori: TKJ62004.1 Feature: domain Description: LZ_Tnp_IS66 Location: 176440-176650 bp Feature: domain Description: LZ_Tnp_IS66 Location: 176440-176650 bp Feature: domain Description: zf-IS66 Location: 176680-176803 bp Feature: domain Description: zf-IS66 Location: 176680-176803 bp Feature: domain Description: DDE_Tnp_IS66 Location: 176848-177703 bp Feature: domain Description: DDE_Tnp_IS66 Location: 176848-177703 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 177724-177838 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 17772 4-177838 bp Feature: gene Location: 177883-178065 bp Feature: domain Description: TnpB_IS66 Location: 177889-178030 bp Feature: domain Description: TnpB_IS66 Location: 177889-178030 bp Feature: gene Location: 178106-179266 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178310-178967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178310-178967 bp Feature: domain Description: GIIM Note: maturase Location: 179045-179264 bp Feature: domain Description: GIIM Note: maturase Location: 179045-1792 64 bp Feature: gene Location: 179673-179978 bp Ori: TKJ62019.1 Feature: domain Description: TnpB_IS66 Location: 179700-179853 bp Feature: domain Description: TnpB_IS66 Location: 179700-179853 bp Feature: gene Location: 180353-180820 bp Ori: TKJ62005.1 Feature: domain Description: Imm6 Location: 180407-180689 bp Feature: domain Description: Imm6 Location: 180407-180689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388), Imm6 (pfam14434)

Seq: QFZY01000024.1 Pseudomonas viridiflava strain CFBP13507 P0624, whole genome shotgun sequence (56728 bp)
Overview 1 RT 1: 46447-50787 bp Neighborhood of RT #1 [46447, 55763] dnaG RVT-UNC Feature: gene Location: 46447-46632 bp Feature: gene Location: 46671-46913 bp Feature: gene Location: 48189-55763 bp Ori: TKJ55668.1 Feature: domain Description: dnaG Location: 48201-49452 bp Feature: domain Description: dnaG Location: 48201-49452 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 50217-50787 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 50217-50787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG25/RVT-UG19/RVT-DGRs/RVT-UG10(RVT-UNC)