myRT

myRT report for GCA_005234565.1_ASM523456v1

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Seq: QPTD01000102.1 Enterococcus faecium strain ARL04-840 NODE_102_length_2761_cov_77.0622_ID_7625, whole genome shotgun sequence (2761 bp)
Overview 1 RT 1: 721-2512 bp Neighborhood of RT #1 [721, 2631] RVT-GII HNHc Feature: gene Location: 721-2631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 054-1 792 bp Feature: domain Description: HNHc Note: nucleases Location: 2347-2512 bp Feature: domain Description: HNHc Note: nucleases Location: 2347-251 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: QPTD01000017.1 Enterococcus faecium strain ARL04-840 NODE_17_length_53641_cov_34.1371_ID_2946, whole genome shotgun sequence (53641 bp)
Overview 1 RT 1: 28643-32009 bp Neighborhood of RT #1 [28643, 32009] RVT-GII GIIM Feature: gene Location: 28643-29014 bp Feature: gene Location: 29018-29245 bp Feature: gene Location: 29348-30622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29549-30164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9549-30164 bp Feature: domain Description: GIIM Note: maturase Location: 30224-30434 bp Feature: domain Description: GIIM Note: maturase Location: 302 2 4-30434 bp Feature: gene Location: 31190-31642 bp Feature: gene Location: 31644-32009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QPTD01000019.1 Enterococcus faecium strain ARL04-840 NODE_19_length_50872_cov_49.8585_ID_1711, whole genome shotgun sequence (50872 bp)
Overview 1 RT 1: 6468-11749 bp Neighborhood of RT #1 [6468, 12441] Glucosaminidase Peptidase_M23 RVT-GII HNHc VirB4 Feature: gene Location: 6468-7673 bp Feature: domain Description: Glucosaminidase Location: 6744-7140 bp Feature: domain Description: Glucosaminidase Location: 6744-7140 bp Feature: domain Description: Peptidase_M23 Location: 7317-7554 bp Feature: domain Description: Peptidase_M23 Location: 73 17-7554 bp Feature: gene Location: 7673-7993 bp Feature: gene Location: 8181-10058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8496-9234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8496-923 4 bp Feature: domain Description: HNHc Note: nucleases Location: 9792-9945 bp Feature: domain Description: HNHc Note: nucleases Location: 9792-9945 bp Feature: gene Location: 10245-10478 bp Feature: gene Location: 10747-12441 bp Feature: domain Description: VirB4 Location: 11062-11749 bp Feature: domain Description: VirB4 Location: 11062-11749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), RVT-GII, HNHc (smart00507), VirB4 (COG3451)

Seq: QPTD01000002.1 Enterococcus faecium strain ARL04-840 NODE_2_length_120205_cov_39.3704_ID_1197, whole genome shotgun sequence (120205 bp)
Overview 1 RT 1: 113093-118224 bp Neighborhood of RT #1 [113093, 118250] FtsK_SpoIIIE RVT-GII HNHc FtsK dcm Feature: gene Location: 113093-113377 bp Feature: gene Location: 113383-114108 bp Feature: domain Description: FtsK_SpoIIIE Location: 113749-113989 bp Feature: domain Description: FtsK_SpoIIIE Location: 11374 9-113989 bp Feature: gene Location: 114702-116576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115068-115764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115068-115764 bp Feature: domain Description: HNHc Note: nucleases Location: 116304-116463 bp Feature: domain Description: HNHc Note: nucleases Location: 116304 -1164 63 bp Feature: gene Location: 116678-117058 bp Feature: domain Description: FtsK Location: 116693-116930 bp Feature: domain Description: FtsK Location: 116693-116930 bp Feature: gene Location: 117096-118250 bp Feature: domain Description: dcm Location: 117183-118224 bp Feature: domain Description: dcm Location: 117183-118224 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK_SpoIIIE (pfam01580), RVT-GII, HNHc (smart00507), FtsK (COG1674), dcm (TIGR00675)

Seq: QPTD01000080.1 Enterococcus faecium strain ARL04-840 NODE_80_length_7342_cov_84.812_ID_4487, whole genome shotgun sequence (7342 bp)
Overview 1 RT 1: 3338-6640 bp Neighborhood of RT #1 [3338, 7302] RMtype1_S_TRD-CR_like HsdM RVT-AbiP2 Feature: gene Location: 3338-3874 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 3527-3851 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 35 27-385 1 bp Feature: gene Location: 3867-5489 bp Feature: domain Description: HsdM Location: 3888-5415 bp Feature: domain Description: HsdM Location: 3888-5 415 bp Feature: gene Location: 5827-7302 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6175-6640 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6175 -6640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_TRD-CR_like (cl38903), HsdM (COG0286), RVT-AbiP2