myRT

myRT report for GCA_005234905.1_ASM523490v1

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Seq: QPRG01000102.1 Enterococcus faecium strain ARL08-983 NODE_102_length_3397_cov_24.9913_ID_5203, whole genome shotgun sequence (3397 bp)
Overview 1 RT 1: 61-3320 bp Neighborhood of RT #1 [61, 3352] RVT-AbiP2 HsdM Feature: gene Location: 61-1536 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 409-874 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 409-874 bp Feature: gene Location: 1874-3352 bp Feature: domain Description: HsdM Location: 1895-3320 bp Feature: domain Description: HsdM Location: 1 895-3320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdM (COG0286)

Seq: QPRG01000028.1 Enterococcus faecium strain ARL08-983 NODE_28_length_31888_cov_34.9892_ID_2009, whole genome shotgun sequence (31888 bp)
Overview 1 RT 1: 6534-11808 bp Neighborhood of RT #1 [6534, 12500] Glucosaminidase Peptidase_M23 RVT-GII HNHc VirB4 Feature: gene Location: 6534-7733 bp Feature: domain Description: Glucosaminidase Location: 6804-7200 bp Feature: domain Description: Glucosaminidase Location: 6804-72 00 bp Feature: domain Description: Peptidase_M23 Location: 7377-7614 bp Feature: domain Description: Peptidase_M2 3 Location: 7377-7614 bp Feature: gene Location: 7733-8053 bp Feature: gene Location: 8241-10118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8556-9294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8556-92 94 bp Feature: domain Description: HNHc Note: nucleases Location: 9852-10005 bp Feature: domain Description: HNHc Note: nucleases Location: 9852 -10005 bp Feature: gene Location: 10305-10538 bp Feature: gene Location: 10806-12500 bp Feature: domain Description: VirB4 Location: 11124-11808 bp Feature: domain Description: VirB4 Location: 1112 4-11808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), RVT-GII, HNHc (smart00507), VirB4 (COG3451)

Seq: QPRG01000039.1 Enterococcus faecium strain ARL08-983 NODE_39_length_24983_cov_34.584_ID_2611, whole genome shotgun sequence (24983 bp)
Overview 1 RT 1: 7519-12271 bp Neighborhood of RT #1 [7519, 12360] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 7519-8016 bp Feature: domain Description: ArdA Location: 7537-8002 bp Feature: domain Description: ArdA Location: 753 7-8002 bp Feature: gene Location: 8133-8300 bp Feature: gene Location: 8461-10371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8794-9532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8794-953 2 bp Feature: domain Description: HNHc Note: nucleases Location: 10087-10252 bp Feature: domain Description: HNHc Note: nucleases Location: 10087-10252 bp Feature: gene Location: 10880-11029 bp Feature: gene Location: 11155-12360 bp Feature: domain Description: HTH_XRE Location: 11200-11344 bp Feature: domain Description: HTH_XRE Location: 11200-113 44 bp Feature: domain Description: Rol_Rep_N Location: 11371-11638 bp Feature: domain Description: Rol_Rep_N Location: 113 71-1163 8 bp Feature: domain Description: Rep_trans Location: 11662-12271 bp Feature: domain Description: Rep_trans Location: 11662-12271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)