myRT

myRT report for GCA_005235305.1_ASM523530v1

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Seq: QPRY01000040.1 Enterococcus faecium strain ARL08-288 NODE_40_length_20348_cov_30.9853_ID_3259, whole genome shotgun sequence (20348 bp)
Overview 1 RT 1: 12548-18401 bp Neighborhood of RT #1 [12548, 18520] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 12548-14242 bp Feature: domain Description: VirB4 Location: 12863-13550 bp Feature: domain Description: VirB4 Location: 1 2863-1 3550 bp Feature: gene Location: 14510-14743 bp Feature: gene Location: 14930-16807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15245-15983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5245-1 5983 bp Feature: domain Description: HNHc Note: nucleases Location: 16541-16694 bp Feature: domain Description: HNHc Note: nucleases Location: 1 6541 -1 6694 bp Feature: gene Location: 16995-17315 bp Feature: gene Location: 17315-18520 bp Feature: domain Description: Glucosaminidase Location: 17591-17987 bp Feature: domain Description: Glucosaminidase Location: 1 7591 -1 7987 bp Feature: domain Description: Peptidase_M23 Location: 18164-18401 bp Feature: domain Description: Peptidase_M23 Location: 1 81 64-1 8401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: QPRY01000006.1 Enterococcus faecium strain ARL08-288 NODE_6_length_92904_cov_35.2824_ID_1893, whole genome shotgun sequence (92904 bp)
Overview 1 RT 1: 59854-65715 bp Neighborhood of RT #1 [59854, 65726] PRK09362 RVT-GII GIIM Adenylsuccinate_lyase_1 PRK06019 Feature: gene Location: 59854-60582 bp Feature: domain Description: PRK09362 Location: 59857-60559 bp Feature: domain Description: PRK09362 Location: 59857-60559 bp Feature: gene Location: 60838-61215 bp Feature: gene Location: 61784-63172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62105-62720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 105-62 72 0 bp Feature: domain Description: GIIM Note: maturase Location: 62777-62993 bp Feature: domain Description: GIIM Note: maturase Location: 62 777-62 993 bp Feature: gene Location: 63294-64589 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 63306-64575 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 63306-64575 bp Feature: gene Location: 64602-65726 bp Feature: domain Description: PRK06019 Location: 64626-65715 bp Feature: domain Description: PRK06019 Location: 6462 6-65715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed), RVT-GII, GIIM (pfam08388), Adenylsuccinate_lyase_1 (cd01360), PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed)

Seq: QPRY01000007.1 Enterococcus faecium strain ARL08-288 NODE_7_length_78038_cov_48.2652_ID_2020, whole genome shotgun sequence (78038 bp)
Overview 1 RT 1: 8303-20831 bp Neighborhood of RT #1 [8303, 20920] AAA_10 RVT-GII AAA_10 ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 8303-10486 bp Feature: gene Location: 10489-11406 bp Feature: domain Description: AAA_10 Location: 10495-11374 bp Feature: domain Description: AAA_10 Location: 10495-113 74 bp Feature: gene Location: 11540-13324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11798-12497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11798-12497 bp Feature: gene Location: 14063-15667 bp Feature: domain Description: AAA_10 Location: 15446-15632 bp Feature: domain Description: AAA_10 Location: 15446-1563 2 bp Feature: gene Location: 16079-16576 bp Feature: domain Description: ArdA Location: 16097-16562 bp Feature: domain Description: ArdA Location: 16097-16562 bp Feature: gene Location: 16693-16860 bp Feature: gene Location: 17021-18931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17354-18092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173 54-18092 bp Feature: domain Description: HNHc Note: nucleases Location: 18647-18812 bp Feature: domain Description: HNHc Note: nucleases Location: 18647-18812 bp Feature: gene Location: 19440-19589 bp Feature: gene Location: 19715-20920 bp Feature: domain Description: HTH_XRE Location: 19760-19904 bp Feature: domain Description: HTH_XRE Location: 19760-19904 bp Feature: domain Description: Rol_Rep_N Location: 19931-20198 bp Feature: domain Description: Rol_Rep_N Location: 1993 1-20198 bp Feature: domain Description: Rep_trans Location: 20222-20831 bp Feature: domain Description: Rep_trans Location: 20222-2083 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII, ArdA (pfam07275), HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)