myRT

myRT report for GCA_005235475.1_ASM523547v1

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Seq: QPSJ01000109.1 Enterococcus faecium strain ARL08-1077 NODE_109_length_3423_cov_93.6001_ID_5463, whole genome shotgun sequence (3423 bp)
Overview 1 RT 1: 53-3312 bp Neighborhood of RT #1 [53, 3344] RVT-AbiP2 HsdM Feature: gene Location: 53-1528 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 401-866 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 401 -866 bp Feature: gene Location: 1866-3344 bp Feature: domain Description: HsdM Location: 1887-3312 bp Feature: domain Description: HsdM Location: 1 887-331 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdM (COG0286)

Seq: QPSJ01000120.1 Enterococcus faecium strain ARL08-1077 NODE_120_length_2761_cov_74.7891_ID_8823, whole genome shotgun sequence (2761 bp)
Overview 1 RT 1: 131-1922 bp Neighborhood of RT #1 [131, 2041] RVT-GII HNHc Feature: gene Location: 131-2041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-12 02 bp Feature: domain Description: HNHc Note: nucleases Location: 1757-1922 bp Feature: domain Description: HNHc Note: nucleases Location: 1757-192 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: QPSJ01000045.1 Enterococcus faecium strain ARL08-1077 NODE_45_length_20468_cov_37.45_ID_2833, whole genome shotgun sequence (20468 bp)
Overview 1 RT 1: 3367-10957 bp Neighborhood of RT #1 [3367, 10965] Zeta_toxin RVT-GII HNHc group_II_RT_mat HNHc RVT-GII FtsK_SpoIIIE RelB_DinJ Feature: gene Location: 3367-3807 bp Feature: domain Description: Zeta_toxin Location: 3445-3802 bp Feature: domain Description: Zeta_toxin Location: 3 445-3 802 bp Feature: gene Location: 3894-4136 bp Feature: gene Location: 4230-6089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4539-5280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453 9-5280 bp Feature: domain Description: HNHc Note: nucleases Location: 5835-5973 bp Feature: domain Description: HNHc Note: nucleases Location: 583 5-5973 bp Feature: gene Location: 6208-6438 bp Feature: gene Location: 6804-6962 bp Feature: gene Location: 7064-7870 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7076-7280 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7076-7280 bp Feature: domain Description: HNHc Note: nucleases Location: 7592-7757 bp Feature: domain Description: HNHc Note: nucleases Location: 7592-7757 bp Feature: gene Location: 7723-8937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8089-8788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8089-8788 bp Feature: gene Location: 9531-10568 bp Feature: domain Description: FtsK_SpoIIIE Location: 10203-10449 bp Feature: domain Description: FtsK_SpoIIIE Location: 10203 -10449 bp Feature: gene Location: 10630-10965 bp Feature: domain Description: RelB_DinJ Location: 10834-10957 bp Feature: domain Description: RelB_DinJ Location: 1083 4-10957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zeta_toxin (pfam06414), RVT-GII, HNHc (smart00507), group_II_RT_mat (TIGR04416), FtsK_SpoIIIE (pfam01580), RelB_DinJ (TIGR02384)

Seq: QPSJ01000055.1 Enterococcus faecium strain ARL08-1077 NODE_55_length_12317_cov_134.43_ID_7811, whole genome shotgun sequence (12317 bp)
Overview 1 RT 1: 1-5665 bp Neighborhood of RT #1 [1, 5784] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 1-1512 bp Feature: domain Description: VirB4 Location: 136-820 bp Feature: domain Description: VirB4 Location: 136-820 bp Feature: gene Location: 1780-2013 bp Feature: gene Location: 2200-4077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2515-3253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2515-3253 bp Feature: domain Description: HNHc Note: nucleases Location: 3811-3964 bp Feature: domain Description: HNHc Note: nucleases Location: 3811-3964 bp Feature: gene Location: 4265-4585 bp Feature: gene Location: 4585-5784 bp Feature: domain Description: Glucosaminidase Location: 4855-5251 bp Feature: domain Description: Glucosaminidase Location: 4 855-5251 bp Feature: domain Description: Peptidase_M23 Location: 5428-5665 bp Feature: domain Description: Peptidase_M23 Location: 54 28-5665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)