myRT

myRT report for GCA_005235965.1_ASM523596v1

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Seq: QPTQ01000114.1 Enterococcus faecium strain AR01-139 NODE_114_length_3209_cov_77.7449_ID_8141, whole genome shotgun sequence (3209 bp)
Overview 1 RT 1: 721-3202 bp Neighborhood of RT #1 [721, 3207] RVT-GII HNHc ArdA Feature: gene Location: 721-2631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 054-1 792 bp Feature: domain Description: HNHc Note: nucleases Location: 2347-2512 bp Feature: domain Description: HNHc Note: nucleases Location: 2347-251 2 bp Feature: gene Location: 2798-2959 bp Feature: gene Location: 2971-3207 bp Feature: domain Description: ArdA Location: 2989-3202 bp Feature: domain Description: ArdA Location: 2989-3202 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), ArdA (pfam07275)

Seq: QPTQ01000029.1 Enterococcus faecium strain AR01-139 NODE_29_length_30131_cov_36.1492_ID_2143, whole genome shotgun sequence (30131 bp)
Overview 1 RT 1: 13946-23741 bp Neighborhood of RT #1 [13946, 23741] VirD4 VirD4 RVT-GII HNH_4 TraG-D_C Feature: gene Location: 13946-16009 bp Feature: gene Location: 16009-17838 bp Feature: domain Description: VirD4 Location: 16420-17263 bp Feature: domain Description: VirD4 Location: 1642 0-172 63 bp Feature: domain Description: VirD4 Location: 17650-17812 bp Feature: domain Description: VirD4 Location: 17650-17812 bp Feature: gene Location: 18533-20449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18872-19607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18872 -19607 bp Feature: domain Description: HNH_4 Location: 20201-20306 bp Feature: domain Description: HNH_4 Location: 2 02 01-2 0306 bp Feature: gene Location: 20575-21366 bp Feature: domain Description: TraG-D_C Location: 20578-20884 bp Feature: domain Description: TraG-D_C Location: 2 0578-2 0884 bp Feature: gene Location: 21363-23741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, HNH_4 (pfam13395), TraG-D_C (pfam12696)

Seq: QPTQ01000085.1 Enterococcus faecium strain AR01-139 NODE_85_length_7340_cov_83.8918_ID_4631, whole genome shotgun sequence (7340 bp)
Overview 1 RT 1: 3286-6639 bp Neighborhood of RT #1 [3286, 7301] RMtype1_S_TRD-CR_like HsdM RVT-AbiP2 Feature: gene Location: 3286-3873 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 3475-3796 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 3 475-3 796 bp Feature: gene Location: 3866-5488 bp Feature: domain Description: HsdM Location: 3887-5414 bp Feature: domain Description: HsdM Location: 3 887-5414 bp Feature: gene Location: 5826-7301 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6174-6639 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6174-663 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_TRD-CR_like (cl38903), HsdM (COG0286), RVT-AbiP2