myRT

myRT report for GCA_005250655.1_ASM525065v1

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Seq: SUMJ01000009.1 Escherichia coli strain L113 NODE_108_length_5091_cov_10.763400, whole genome shotgun sequence (5091 bp)
Overview 1 RT 1: 1-3070 bp Neighborhood of RT #1 [1, 3070] RVT-GII GIIM PHA02517 Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Feature: gene Location: 2357-2743 bp Feature: domain Description: PHA02517 Location: 2360-2741 bp Feature: domain Description: PHA0251 7 Location: 2360-2741 bp Feature: gene Location: 2939-3070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: SUMJ01000032.1 Escherichia coli strain L113 NODE_129_length_3639_cov_11.021702, whole genome shotgun sequence (3639 bp)
Overview 1 RT 1: 3-3636 bp Neighborhood of RT #1 [3, 3636] RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 3-128 bp Feature: gene Location: 609-749 bp Feature: gene Location: 771-2495 bp Feature: domain Description: RVT_N Location: 828-1065 bp Feature: domain Description: RVT_N Location: 82 8-1065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1116-1764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1116-1764 bp Feature: domain Description: YkfC Location: 1896-2052 bp Feature: domain Description: YkfC Location: 1896-2 052 bp Feature: domain Description: HNHc Note: nucleases Location: 2280-2439 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 80-2 439 bp Feature: gene Location: 2572-3474 bp Feature: domain Description: DUF1281 Location: 2641-3169 bp Feature: domain Description: DUF12 81 Location: 2 641-3169 bp Feature: domain Description: DUF1281_C Location: 3175-3415 bp Feature: domain Description: DUF12 81_C Location: 3175-3415 bp Feature: gene Location: 3478-3636 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: SUMJ01000044.1 Escherichia coli strain L113 NODE_13_length_113143_cov_4.167295, whole genome shotgun sequence (113143 bp)
Overview 1 RT 1: 105250-111095 bp Neighborhood of RT #1 [105250, 111097] Pox_D5 RVT-Retrons TIR_2 Prim_Zn_Ribbon COG3378 DUF5375 Feature: gene Location: 105250-105426 bp Feature: gene Location: 105821-105973 bp Feature: domain Description: Pox_D5 Location: 105824-105947 bp Feature: domain Description: Pox_D5 Location: 105824-105947 bp Feature: gene Location: 106211-107842 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106526-107123 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106526-107123 bp Feature: domain Description: TIR_2 Location: 107447-107804 bp Feature: domain Description: TIR_2 Location: 107447-107804 bp Feature: gene Location: 108429-110762 bp Feature: domain Description: Prim_Zn_Ribbon Location: 108519-108627 bp Feature: domain Description: Prim_Zn_Ribbon Location: 108519-108627 bp Feature: domain Description: COG3378 Location: 109239-110751 bp Feature: domain Description: COG3 3 78 Location: 10923 9-110751 bp Feature: gene Location: 110777-111097 bp Feature: domain Description: DUF5375 Location: 110780-111095 bp Feature: domain Description: DUF53 75 Location: 110780-111095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pox_D5 (pfam03288), RVT-Retrons, TIR_2 (pfam13676), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), DUF5375 (pfam17345)

Seq: SUMJ01000267.1 Escherichia coli strain L113 NODE_69_length_15184_cov_4.589744, whole genome shotgun sequence (15184 bp)
Overview 1 RT 1: 8089-11978 bp Neighborhood of RT #1 [8089, 11983] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 8089-8442 bp Feature: gene Location: 8801-8998 bp Feature: gene Location: 9167-9601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9359-9575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9359-9575 bp Feature: gene Location: 9574-10425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9577-9985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9577-9985 bp Feature: domain Description: GIIM Note: maturase Location: 10033-10258 bp Feature: domain Description: GIIM Note: maturase Location: 10033-10258 bp Feature: gene Location: 10603-10821 bp Feature: gene Location: 10952-11983 bp Feature: domain Description: LacI Location: 10994-11129 bp Feature: domain Description: LacI Location: 10994 -11129 bp Feature: domain Description: PBP1_GntR Location: 11168-11978 bp Feature: domain Description: PBP1_GntR Location: 11168-11978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)