myRT

myRT report for GCA_005281055.1_ASM528105v1

Download annotations/find similar RTs

Seq: SZXC01000056.1 Citrobacter sp. wls711 contig104, whole genome shotgun sequence (57914 bp)
Overview 1 RT 1: 3950-10776 bp Neighborhood of RT #1 [3950, 10778] PRK09669 Sugarporin_N Porin_8 RVT-GII GIIM efflux_EmrB PRK15136 Feature: gene Location: 3950-5308 bp Ori: TKU58003.1 Feature: domain Description: PRK09669 Location: 3968-5282 bp Feature: domain Description: PRK09669 Location: 3968-5282 bp Feature: gene Location: 5392-6762 bp Ori: TKU58004.1 Feature: domain Description: Sugarporin_N Location: 5395-5548 bp Feature: domain Description: Sugarporin_N Location: 5395-5548 bp Feature: domain Description: Porin_8 Location: 5668-6760 bp Feature: domain Description: Porin_8 Location: 5668-6760 bp Feature: gene Location: 7248-7950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7308-7509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7308-7509 bp Feature: domain Description: GIIM Note: maturase Location: 7557-7680 bp Feature: domain Description: GIIM Note: maturase Location: 7557-7680 bp Feature: gene Location: 8054-9589 bp Ori: TKU58005.1 Gene: emrB Feature: domain Description: efflux_EmrB Location: 8093-9548 bp Feature: domain Description: efflux_EmrB Location: 8093-9548 bp Feature: gene Location: 9606-10778 bp Ori: TKU58006.1 Gene: emrA Feature: domain Description: PRK15136 Location: 9609-10776 bp Feature: domain Description: PRK1 51 36 Location: 9609-1 0776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09669 (putative symporter YagG; Provisional), Sugarporin_N (pfam11471), Porin_8 (pfam16966), RVT-GII, GIIM (pfam08388), efflux_EmrB (TIGR00711), PRK15136 (multidrug efflux MFS transporter periplasmic adaptor subunit EmrA)

Seq: SZXC01000080.1 Citrobacter sp. wls711 contig125, whole genome shotgun sequence (31720 bp)
Overview 1 RT 1: 12003-17479 bp Neighborhood of RT #1 [12003, 17535] COG4584 IstB_IS21_ATP IstB_IS21 RVT-GII LysR PTDH Feature: gene Location: 12003-13544 bp Ori: TKU54168.1 Feature: domain Description: COG4584 Location: 12153-12915 bp Feature: domain Description: COG4584 Location: 12 153-12 915 bp Feature: gene Location: 13557-14312 bp Ori: TKU54169.1 Feature: domain Description: IstB_IS21_ATP Location: 13629-13713 bp Feature: domain Description: IstB_IS2 1_ATP Location: 1362 9-13713 bp Feature: domain Description: IstB_IS21 Location: 13716-14244 bp Feature: domain Description: IstB_IS2 1 Location: 13716-142 44 bp Feature: gene Location: 15064-15756 bp Ori: TKU54170.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15112-15703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15112 -15703 bp Feature: gene Location: 15671-16531 bp Ori: TKU54171.1 Feature: domain Description: LysR Location: 15680-16523 bp Feature: domain Description: LysR Location: 15680-1652 3 bp Feature: gene Location: 16525-17535 bp Ori: TKU54172.1 Feature: domain Description: PTDH Location: 16531-17479 bp Feature: domain Description: PTDH Location: 16531-17479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), RVT-GII, LysR (COG0583), PTDH (cd12157)