myRT

myRT report for GCA_005281345.1_ASM528134v1

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Seq: SZXJ01000035.1 Citrobacter sp. wls619 contig19, whole genome shotgun sequence (349451 bp)
Overview 1 RT 1: 270480-274542 bp 2 RT 2: 280833-284070 bp Neighborhood of RT #1 [270480, 274568] YafY RVT-UG7 Phage_ASH Neighborhood of RT #2 [280833, 284129] RVT-Retrons HicB Feature: gene Location: 270480-270650 bp Feature: gene Location: 270756-271622 bp Feature: domain Description: YafY Location: 271056-271365 bp Feature: domain Description: YafY Location: 271 056-271 365 bp Feature: gene Location: 272070-273614 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 272448-272868 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 272448-272868 bp Feature: gene Location: 273678-274151 bp Feature: gene Location: 274338-274568 bp Feature: domain Description: Phage_ASH Location: 274374-274542 bp Feature: domain Description: Phage_ASH Location: 274374-274542 bp Feature: gene Location: 280833-280988 bp Feature: gene Location: 281062-282162 bp Feature: gene Location: 282149-283099 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 282248-282839 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 282248-282839 bp Feature: gene Location: 283360-283926 bp Feature: gene Location: 283935-284129 bp Feature: domain Description: HicB Location: 283959-284070 bp Feature: domain Description: HicB Location: 283959-284070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YafY (COG2378), RVT-UG7, Phage_ASH (pfam10554), RVT-Retrons, HicB (pfam05534)

Seq: SZXJ01000109.1 Citrobacter sp. wls619 contig289, whole genome shotgun sequence (2602 bp)
Overview 1 RT 1: 172-2110 bp Neighborhood of RT #1 [172, 2466] RVT-GII Intron_maturas2 Feature: gene Location: 172-408 bp Feature: gene Location: 547-2466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 913-1744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 913-1744 bp Feature: domain Description: Intron_maturas2 Location: 1861-2110 bp Feature: domain Description: Intron_maturas2 Location: 1861-2 110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: SZXJ01000083.1 Citrobacter sp. wls619 contig56, whole genome shotgun sequence (122083 bp)
Overview 1 RT 1: 3-3746 bp Neighborhood of RT #1 [3, 3790] PRK10902 RVT-GII efflux_EmrB Feature: gene Location: 3-905 bp Feature: domain Description: PRK10902 Location: 549-861 bp Feature: domain Description: PRK10902 Location: 549-861 bp Feature: gene Location: 1287-1589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1299-1488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1299-1488 bp Feature: gene Location: 1929-2153 bp Feature: gene Location: 2252-3790 bp Feature: domain Description: efflux_EmrB Location: 2291-3746 bp Feature: domain Description: efflux_EmrB Location: 2291-3 746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10902 (FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional), RVT-GII, efflux_EmrB (TIGR00711)