myRT

myRT report for GCA_005381505.1_ASM538150v1

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Seq: BFFW01000023.1 Escherichia coli BE1816 DNA, sequence023, whole genome shotgun sequence (141335 bp)
Overview 1 RT 1: 39212-43094 bp Neighborhood of RT #1 [39212, 43099] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 39212-39670 bp Ori: GCN76018.1 Gene: dut Feature: domain Description: dut Location: 39218-39665 bp Feature: domain Description: dut Location: 3921 8-39665 bp Feature: gene Location: 39777-40373 bp Ori: GCN76025.1 Gene: slmA Feature: domain Description: slmA Location: 39783-40359 bp Feature: domain Description: slmA Location: 39783-40359 bp Feature: gene Location: 40419-41378 bp Ori: GCN76032.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40554-41103 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40554-41 1 03 bp Feature: gene Location: 41676-42317 bp Ori: GCN76038.1 Gene: pyrE Feature: domain Description: pyrE Location: 41679-42312 bp Feature: domain Description: pyrE Location: 41 679-4231 2 bp Feature: gene Location: 42383-43099 bp Ori: GCN76045.1 Gene: rph Feature: domain Description: rph Location: 42386-43094 bp Feature: domain Description: rph Location: 42386-43094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: BFFW01000037.1 Escherichia coli BE1816 DNA, sequence037, whole genome shotgun sequence (89451 bp)
Overview 1 RT 1: 13679-18829 bp Neighborhood of RT #1 [13679, 19020] RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 13679-14617 bp Feature: gene Location: 14933-15091 bp Feature: gene Location: 15675-16718 bp Ori: GCN84807.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15888-16485 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15888-16485 bp Feature: gene Location: 16715-18370 bp Ori: GCN84815.1 Feature: domain Description: COG3950 Location: 16916-18338 bp Feature: domain Description: COG3950 Location: 16916-18338 bp Feature: gene Location: 18373-19020 bp Ori: GCN84824.1 Feature: domain Description: TIGR02646 Location: 18442-18829 bp Feature: domain Description: TIGR02 646 Location: 18442 -1882 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: BFFW01000029.1 Escherichia coli BE1816 DNA, sequence029, whole genome shotgun sequence (228872 bp)
Overview 1 RT 1: 157902-161328 bp Neighborhood of RT #1 [157902, 161402] ArgR RVT-GII GIIM RVT-GII CdiI_3 Ntox28 Feature: gene Location: 157902-158378 bp Ori: GCN78315.1 Feature: domain Description: ArgR Location: 157932-158364 bp Feature: domain Description: ArgR Location: 15793 2-1583 64 bp Feature: gene Location: 158616-158834 bp Feature: gene Location: 159084-159896 bp Ori: GCN78329.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159093-159543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159093 -159543 bp Feature: domain Description: GIIM Note: maturase Location: 159594-159759 bp Feature: domain Description: GIIM Note: maturase Location: 159594-159759 bp Feature: gene Location: 159893-160375 bp Ori: GCN78336.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160214-160301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160214-1603 01 bp Feature: gene Location: 160822-161208 bp Ori: GCN78345.1 Feature: domain Description: CdiI_3 Location: 160846-161122 bp Feature: domain Description: CdiI_3 Location: 160846-161122 bp Feature: gene Location: 161205-161402 bp Ori: GCN78352.1 Feature: domain Description: Ntox28 Location: 161211-161328 bp Feature: domain Description: Ntox28 Location: 161211-1613 28 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArgR (COG1438), RVT-GII, GIIM (pfam08388), CdiI_3 (pfam18616), Ntox28 (pfam15605)