myRT

myRT report for GCA_005382285.1_ASM538228v1

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Seq: BFHJ01000066.1 Escherichia coli ECSC012 DNA, sequence066, whole genome shotgun sequence (16752 bp)
Overview 1 RT 1: 1288-7151 bp Neighborhood of RT #1 [1288, 7165] PRK13381 DcuC RVT-GII Asparaginase_2 DUF5339 Feature: gene Location: 1288-2544 bp Ori: GCP09461.1 Gene: pepT_2 Feature: domain Description: PRK13381 Location: 1294-2509 bp Feature: domain Description: PRK1 3381 Location: 1 294-2509 bp Feature: gene Location: 2541-3902 bp Ori: GCP09464.1 Gene: dcuD_1 Feature: domain Description: DcuC Location: 2544-3876 bp Feature: domain Description: DcuC Location: 2544-3876 bp Feature: gene Location: 4548-4994 bp Ori: GCP09468.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4854-4956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4854-4956 bp Feature: gene Location: 5518-6549 bp Ori: GCP09470.1 Gene: iaaA_2 Feature: domain Description: Asparaginase_2 Location: 5608-6541 bp Feature: domain Description: Asparaginase_2 Location: 5608-6541 bp Feature: gene Location: 6887-7165 bp Ori: GCP09473.1 Feature: domain Description: DUF5339 Location: 6950-7151 bp Feature: domain Description: DUF5339 Location: 6950-71 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13381 (peptidase T; Provisional), DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112), DUF5339 (pfam17274)

Seq: BFHJ01000110.1 Escherichia coli ECSC012 DNA, sequence110, whole genome shotgun sequence (2052 bp)
Overview 1 RT 1: 397-1498 bp Neighborhood of RT #1 [397, 1743] RVT-GII GIIM Feature: gene Location: 397-1743 bp Ori: GCP14192.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 493-1225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 493-12 2 5 bp Feature: domain Description: GIIM Note: maturase Location: 1300-1498 bp Feature: domain Description: GIIM Note: maturase Location: 1300-1498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BFHJ01000002.1 Escherichia coli ECSC012 DNA, sequence002, whole genome shotgun sequence (487939 bp)
Overview 1 RT 1: 24326-29645 bp Neighborhood of RT #1 [24326, 29671] YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 24326-25555 bp Ori: GCO95453.1 Feature: domain Description: YesM Location: 24806-25547 bp Feature: domain Description: YesM Location: 24806-25547 bp Feature: gene Location: 25628-25816 bp Feature: gene Location: 26138-26620 bp Ori: GCO95459.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26147-26387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26147-263 87 bp Feature: domain Description: GIIM Note: maturase Location: 26435-26615 bp Feature: domain Description: GIIM Note: maturase Location: 2643 5-26615 bp Feature: gene Location: 26687-27226 bp Ori: GCO95463.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27017-27095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27017-27095 bp Feature: gene Location: 27712-28617 bp Feature: gene Location: 28754-29671 bp Ori: GCO95473.1 Feature: domain Description: PFLE_PFLC Location: 28790-29645 bp Feature: domain Description: PFLE_PFLC Location: 28790-29645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)

Seq: BFHJ01000069.1 Escherichia coli ECSC012 DNA, sequence069, whole genome shotgun sequence (166319 bp)
Overview 1 RT 1: 137637-143746 bp Neighborhood of RT #1 [137637, 143805] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Feature: gene Location: 137637-138557 bp Ori: GCP09927.1 Feature: domain Description: AbiEii Location: 137679-138420 bp Feature: domain Description: AbiEii Location: 137679-1384 20 bp Feature: gene Location: 138544-139326 bp Ori: GCP09930.1 Feature: domain Description: AbiEi_3_N Location: 138556-138817 bp Feature: domain Description: AbiEi_3_N Location: 138556-138817 bp Feature: domain Description: AbiEi_3 Location: 138829-139285 bp Feature: domain Description: AbiEi_3 Location: 138829-139285 bp Feature: gene Location: 139642-142851 bp Ori: GCP09933.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 140170-140659 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 14 0170-14 0659 bp Feature: domain Description: nitrilase Location: 142165-142762 bp Feature: domain Description: nitrilase Location: 14 2165-14 2762 bp Feature: gene Location: 143198-143668 bp Feature: gene Location: 143665-143805 bp Ori: GCP09939.1 Feature: domain Description: SfsB Location: 143674-143746 bp Feature: domain Description: SfsB Location: 14 3674 -14 374 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423)