myRT

myRT report for GCA_005382445.1_ASM538244v1

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Seq: BFHP01000023.1 Escherichia coli ECSC020 DNA, sequence023, whole genome shotgun sequence (309406 bp)
Overview 1 RT 1: 954-4424 bp Neighborhood of RT #1 [954, 4531] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 954-1256 bp Ori: GCM66100.1 Gene: intZ_1 Feature: domain Description: Arm-DNA-bind_3 Location: 963-1215 bp Feature: domain Description: Arm-DNA-bind_3 Location: 963-1 21 5 bp Feature: gene Location: 1711-2643 bp Ori: GCM66108.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1813-2407 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 81 3-2407 bp Feature: gene Location: 2645-3631 bp Feature: gene Location: 4259-4531 bp Ori: GCM66123.1 Feature: domain Description: PRK09678 Location: 4268-4424 bp Feature: domain Description: PRK09678 Location: 4268-4424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: BFHP01000078.1 Escherichia coli ECSC020 DNA, sequence078, whole genome shotgun sequence (537865 bp)
Overview 1 RT 1: 525178-532830 bp Neighborhood of RT #1 [525178, 532830] DUF4917 AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 525178-526197 bp Ori: GCM90466.1 Feature: domain Description: DUF4917 Location: 525238-526162 bp Feature: domain Description: DUF4917 Location: 52 52 38-52 6162 bp Feature: gene Location: 527596-529842 bp Ori: GCM90473.1 Feature: domain Description: AAA_15 Location: 527599-528607 bp Feature: domain Description: AAA_15 Location: 52 7599-52 8607 bp Feature: gene Location: 529957-531057 bp Ori: GCM90481.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 530140-530668 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 530140-530668 bp Feature: gene Location: 531713-532582 bp Ori: GCM90488.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 532235-532406 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 532 2 35-532 406 bp Feature: gene Location: 532579-532830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4917 (pfam16263), AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)

Seq: BFHP01000101.1 Escherichia coli ECSC020 DNA, sequence101, whole genome shotgun sequence (2647 bp)
Overview 1 RT 1: 795-2073 bp Neighborhood of RT #1 [795, 2318] RVT-GII GIIM Feature: gene Location: 795-2318 bp Ori: GCM92398.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1068-1800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1068-1800 bp Feature: domain Description: GIIM Note: maturase Location: 1875-2073 bp Feature: domain Description: GIIM Note: maturase Location: 1875-2073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BFHP01000045.1 Escherichia coli ECSC020 DNA, sequence045, whole genome shotgun sequence (237029 bp)
Overview 1 RT 1: 21835-27172 bp Neighborhood of RT #1 [21835, 27180] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Feature: gene Location: 21835-22752 bp Ori: GCM75886.1 Feature: domain Description: PFLE_PFLC Location: 21871-22726 bp Feature: domain Description: PFLE_PFLC Location: 21871-22726 bp Feature: gene Location: 22889-23794 bp Feature: gene Location: 24280-24819 bp Ori: GCM75896.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24610-24688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 610-24 688 bp Feature: gene Location: 24886-25368 bp Ori: GCM75902.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24895-25135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 895-25135 bp Feature: domain Description: GIIM Note: maturase Location: 25183-25363 bp Feature: domain Description: GIIM Note: maturase Location: 25183-25363 bp Feature: gene Location: 25690-25878 bp Feature: gene Location: 25951-27180 bp Ori: GCM75913.1 Feature: domain Description: YesM Location: 26431-27172 bp Feature: domain Description: YesM Location: 264 31-27172 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: BFHP01000053.1 Escherichia coli ECSC020 DNA, sequence053, whole genome shotgun sequence (52772 bp)
Overview 1 RT 1: 45267-52659 bp Neighborhood of RT #1 [45267, 52667] prfC PRK10597 RVT-Retrons TIR_2 Peptidase_S74 APC_N_CC Feature: gene Location: 45267-46853 bp Ori: GCM80881.1 Gene: prfC Feature: domain Description: prfC Location: 45285-46851 bp Feature: domain Description: prfC Location: 45 285 -4685 1 bp Feature: gene Location: 47073-47333 bp Ori: GCM80887.1 Gene: dinI_2 Feature: domain Description: PRK10597 Location: 47076-47316 bp Feature: domain Description: PRK105 97 Location: 47076-47316 bp Feature: gene Location: 47667-49295 bp Ori: GCM80893.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47982-48573 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47982-485 73 bp Feature: domain Description: TIR_2 Location: 48900-49233 bp Feature: domain Description: TIR_2 Location: 48900-49233 bp Feature: gene Location: 49923-52667 bp Ori: GCM80898.1 Feature: domain Description: Peptidase_S74 Location: 52236-52383 bp Feature: domain Description: Peptidase_S74 Location: 5 2236-5 2383 bp Feature: domain Description: APC_N_CC Location: 52536-52659 bp Feature: domain Description: APC_N_CC Location: 5 25 36-5 265 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Peptidase_S74 (pfam13884), APC_N_CC (pfam16689)