myRT

myRT report for GCA_005382485.1_ASM538248v1

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Seq: BFHR01000012.1 Escherichia coli ECSC022 DNA, sequence012, whole genome shotgun sequence (23698 bp)
Overview 1 RT 1: 15712-21554 bp Neighborhood of RT #1 [15712, 21589] DUF5339 Asparaginase_2 RVT-GII DcuC PRK13381 Feature: gene Location: 15712-15990 bp Ori: GCN37684.1 Feature: domain Description: DUF5339 Location: 15775-15976 bp Feature: domain Description: DUF5339 Location: 1 5775-1 5976 bp Feature: gene Location: 16328-17359 bp Ori: GCN37690.1 Gene: iaaA_1 Feature: domain Description: Asparaginase_2 Location: 16418-17351 bp Feature: domain Description: Asparaginase_2 Location: 1 641 8-1 7351 bp Feature: gene Location: 17883-18329 bp Ori: GCN37696.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18189-18291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 89-1 8291 bp Feature: gene Location: 18975-20336 bp Ori: GCN37702.1 Gene: dcuD_1 Feature: domain Description: DcuC Location: 18978-20310 bp Feature: domain Description: DcuC Location: 1 8978-2031 0 bp Feature: gene Location: 20333-21589 bp Ori: GCN37708.1 Gene: pepT_1 Feature: domain Description: PRK13381 Location: 20339-21554 bp Feature: domain Description: PRK1 3381 Location: 20339-21 554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5339 (pfam17274), Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771), PRK13381 (peptidase T; Provisional)

Seq: BFHR01000043.1 Escherichia coli ECSC022 DNA, sequence043, whole genome shotgun sequence (138146 bp)
Overview 1 RT 1: 55671-59553 bp 2 RT 2: 133674-137254 bp Neighborhood of RT #1 [55671, 59558] dut slmA RVT-Retrons pyrE rph Neighborhood of RT #2 [133674, 137254] HTH_Tnp_1 HTH_Tnp_1 HTH_Tnp_1_2 COG3547 RVT-GII Feature: gene Location: 55671-56129 bp Ori: GCN50433.1 Gene: dut Feature: domain Description: dut Location: 55677-56124 bp Feature: domain Description: dut Location: 55677-5612 4 bp Feature: gene Location: 56236-56832 bp Ori: GCN50437.1 Gene: slmA Feature: domain Description: slmA Location: 56242-56818 bp Feature: domain Description: slmA Location: 562 42 -56818 bp Feature: gene Location: 56878-57837 bp Ori: GCN50444.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57013-57562 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57013-57562 bp Feature: gene Location: 58135-58776 bp Ori: GCN50450.1 Gene: pyrE Feature: domain Description: pyrE Location: 58138-58771 bp Feature: domain Description: pyrE Location: 58138-58771 bp Feature: gene Location: 58842-59558 bp Ori: GCN50457.1 Gene: rph Feature: domain Description: rph Location: 58845-59553 bp Feature: domain Description: rph Location: 58845-59553 bp Feature: gene Location: 133674-134237 bp Ori: GCN50876.1 Feature: domain Description: HTH_Tnp_1 Location: 133680-133824 bp Feature: domain Description: HTH_Tnp_1 Location: 133680-13382 4 bp Feature: domain Description: HTH_Tnp_1 Location: 133839-134055 bp Feature: domain Description: HTH_Tnp_1 Location: 133839-134055 bp Feature: domain Description: HTH_Tnp_1_2 Location: 134073-134145 bp Feature: domain Description: HTH_Tnp_1_2 Location: 134073-134145 bp Feature: gene Location: 134522-135391 bp Ori: GCN50883.1 Feature: domain Description: COG3547 Location: 134525-135338 bp Feature: domain Description: COG3547 Location: 13452 5-135338 bp Feature: gene Location: 135763-137097 bp Ori: GCN50889.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136048-136735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136048-136735 bp Feature: gene Location: 137051-137254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), HTH_Tnp_1 (pfam01527), HTH_Tnp_1_2 (pfam13022), COG3547 (Transposase ), RVT-GII

Seq: BFHR01000064.1 Escherichia coli ECSC022 DNA, sequence064, whole genome shotgun sequence (454723 bp)
Overview 1 RT 1: 423059-428444 bp Neighborhood of RT #1 [423059, 428470] YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 423059-424288 bp Ori: GCN59395.1 Feature: domain Description: YesM Location: 423539-424280 bp Feature: domain Description: YesM Location: 423 53 9-424280 bp Feature: gene Location: 424361-424549 bp Feature: gene Location: 424937-425419 bp Ori: GCN59411.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424946-425186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424946-425186 bp Feature: domain Description: GIIM Note: maturase Location: 425234-425414 bp Feature: domain Description: GIIM Note: maturase Location: 42523 4-425414 bp Feature: gene Location: 425486-426025 bp Ori: GCN59418.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425816-425894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425816-425894 bp Feature: gene Location: 426511-427416 bp Feature: gene Location: 427553-428470 bp Ori: GCN59431.1 Feature: domain Description: PFLE_PFLC Location: 427589-428444 bp Feature: domain Description: PFLE_PFLC Location: 427589-428444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)