myRT

myRT report for GCA_005382545.1_ASM538254v1

Download annotations/find similar RTs

Seq: BFHU01000011.1 Escherichia coli ECSC025 DNA, sequence11, whole genome shotgun sequence (101564 bp)
Overview 1 RT 1: 42282-46164 bp Neighborhood of RT #1 [42282, 46169] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 42282-42998 bp Ori: GCO47155.1 Gene: rph Feature: domain Description: rph Location: 42285-42993 bp Feature: domain Description: rph Location: 42285-42993 bp Feature: gene Location: 43064-43705 bp Ori: GCO47159.1 Gene: pyrE Feature: domain Description: pyrE Location: 43067-43700 bp Feature: domain Description: pyrE Location: 43067-43700 bp Feature: gene Location: 44003-44962 bp Ori: GCO47163.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44138-44687 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 441 38-44687 bp Feature: gene Location: 45008-45604 bp Ori: GCO47167.1 Gene: slmA Feature: domain Description: slmA Location: 45014-45590 bp Feature: domain Description: slmA Location: 4501 4-45590 bp Feature: gene Location: 45711-46169 bp Ori: GCO47171.1 Gene: dut Feature: domain Description: dut Location: 45717-46164 bp Feature: domain Description: dut Location: 4571 7-461 64 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: BFHU01000068.1 Escherichia coli ECSC025 DNA, sequence68, whole genome shotgun sequence (10783 bp)
Overview 1 RT 1: 7736-10032 bp Neighborhood of RT #1 [7736, 10277] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 7736-8086 bp Ori: GCO71312.1 Feature: domain Description: InsE Location: 7745-8033 bp Feature: domain Description: InsE Location: 7745-8033 bp Feature: gene Location: 8191-8562 bp Ori: GCO71317.1 Feature: domain Description: PHA02517 Location: 8194-8560 bp Feature: domain Description: PHA02 517 Location: 8194-8560 bp Feature: gene Location: 8754-10277 bp Ori: GCO71322.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9027-9759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 902 7-9759 bp Feature: domain Description: GIIM Note: maturase Location: 9834-10032 bp Feature: domain Description: GIIM Note: maturase Location: 9834-10032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: BFHU01000024.1 Escherichia coli ECSC025 DNA, sequence24, whole genome shotgun sequence (53029 bp)
Overview 1 RT 1: 23640-29043 bp Neighborhood of RT #1 [23640, 29051] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Feature: gene Location: 23640-24557 bp Ori: GCO53785.1 Feature: domain Description: PFLE_PFLC Location: 23676-24531 bp Feature: domain Description: PFLE_PFLC Location: 23 676-2453 1 bp Feature: gene Location: 24694-25599 bp Feature: gene Location: 26085-26624 bp Ori: GCO53796.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26415-26493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26415-26493 bp Feature: gene Location: 26691-27173 bp Ori: GCO53802.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26700-26940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26700-26940 bp Feature: domain Description: GIIM Note: maturase Location: 26988-27168 bp Feature: domain Description: GIIM Note: maturase Location: 26988-27168 bp Feature: gene Location: 27561-27749 bp Feature: gene Location: 27822-29051 bp Ori: GCO53816.1 Feature: domain Description: YesM Location: 28302-29043 bp Feature: domain Description: YesM Location: 283 02-29043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: BFHU01000032.1 Escherichia coli ECSC025 DNA, sequence32, whole genome shotgun sequence (53044 bp)
Overview 1 RT 1: 21448-26293 bp Neighborhood of RT #1 [21448, 26394] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc AdoMet_MTases Feature: gene Location: 21448-21681 bp Ori: GCO59075.1 Gene: ykfF_2 Feature: domain Description: DUF905 Location: 21478-21676 bp Feature: domain Description: DUF905 Location: 214 78-21676 bp Feature: gene Location: 21744-22196 bp Ori: GCO59080.1 Gene: ssb_2 Feature: domain Description: PRK13732 Location: 21747-22194 bp Feature: domain Description: PRK13732 Location: 2174 7-22194 bp Feature: gene Location: 22391-24292 bp Ori: GCO59085.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22658-23489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22658-234 89 bp Feature: domain Description: Intron_maturas2 Location: 23603-23861 bp Feature: domain Description: Intron_maturas2 Location: 23603-23861 bp Feature: domain Description: HNHc Note: nucleases Location: 24035-24197 bp Feature: domain Description: HNHc Note: nucleases Location: 24 035-24 197 bp Feature: gene Location: 25587-25805 bp Feature: gene Location: 25831-26394 bp Ori: GCO59095.1 Feature: domain Description: AdoMet_MTases Location: 25993-26293 bp Feature: domain Description: AdoMet_MTases Location: 25993-26293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), AdoMet_MTases (cl17173)