myRT

myRT report for GCA_005382675.1_ASM538267v1

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Seq: BFIA01000047.1 Escherichia coli ECSC031 DNA, sequence47, whole genome shotgun sequence (24791 bp)
Overview 1 RT 1: 2092-6358 bp Neighborhood of RT #1 [2092, 6360] FaeA PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 2092-2313 bp Ori: GCL77556.1 Gene: papI Feature: domain Description: FaeA Location: 2095-2272 bp Feature: domain Description: FaeA Location: 2095-2272 bp Feature: gene Location: 2964-3323 bp Ori: GCL77560.1 Feature: domain Description: PHA02517 Location: 2967-3321 bp Feature: domain Description: PHA0251 7 Location: 2967-3321 bp Feature: gene Location: 3440-4963 bp Ori: GCL77564.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3713-4445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 3-4445 bp Feature: domain Description: GIIM Note: maturase Location: 4520-4718 bp Feature: domain Description: GIIM Note: maturase Location: 4520-471 8 bp Feature: gene Location: 5555-6034 bp Ori: GCL77568.1 Feature: domain Description: PHA02517 Location: 5618-5969 bp Feature: domain Description: PHA0251 7 Location: 561 8-5969 bp Feature: gene Location: 6034-6360 bp Ori: GCL77572.1 Feature: domain Description: InsE Location: 6037-6358 bp Feature: domain Description: InsE Location: 6037-6358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FaeA (pfam04703), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: BFIA01000016.1 Escherichia coli ECSC031 DNA, sequence16, whole genome shotgun sequence (157660 bp)
Overview 1 RT 1: 103938-110272 bp Neighborhood of RT #1 [103938, 110280] RVT-Retrons PRK11388 Feature: gene Location: 103938-105065 bp Feature: gene Location: 105123-105290 bp Feature: gene Location: 105312-107069 bp Ori: GCP62046.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 105456-106074 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 105456-106074 bp Feature: gene Location: 107640-107879 bp Feature: gene Location: 108361-110280 bp Ori: GCP62050.1 Gene: dhaR Feature: domain Description: PRK11388 Location: 108364-110272 bp Feature: domain Description: PRK11388 Location: 108364-1102 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional)

Seq: BFIA01000008.1 Escherichia coli ECSC031 DNA, sequence08, whole genome shotgun sequence (65958 bp)
Overview 1 RT 1: 7030-15461 bp Neighborhood of RT #1 [7030, 15856] GerD RVT-UG1 YeeP AidA AidA Feature: gene Location: 7030-7464 bp Ori: GCP59030.1 Feature: domain Description: GerD Location: 7108-7222 bp Feature: domain Description: GerD Location: 7108-7222 bp Feature: gene Location: 7473-8456 bp Feature: gene Location: 8690-11161 bp Ori: GCP59036.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 9302-9812 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 93 02-9812 bp Feature: gene Location: 11765-12637 bp Ori: GCP59039.1 Gene: yfjP_2 Feature: domain Description: YeeP Location: 11768-12635 bp Feature: domain Description: YeeP Location: 11768-1263 5 bp Feature: gene Location: 13010-15856 bp Ori: GCP59042.1 Gene: flu_2 Feature: domain Description: AidA Location: 13049-15011 bp Feature: domain Description: AidA Location: 13 049-15011 bp Feature: domain Description: AidA Location: 15050-15461 bp Feature: domain Description: AidA Location: 15050-15461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GerD (pfam17898), RVT-UG1, YeeP (COG3596), AidA (COG3468)