myRT

myRT report for GCA_005382845.1_ASM538284v1

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Seq: BFIH01000067.1 Escherichia coli ECSC038 DNA, sequence067, whole genome shotgun sequence (40372 bp)
Overview 1 RT 1: 13140-19003 bp Neighborhood of RT #1 [13140, 19017] PRK13381 DcuC RVT-GII Asparaginase_2 DUF5339 Feature: gene Location: 13140-14396 bp Ori: GCO39702.1 Gene: pepT_2 Feature: domain Description: PRK13381 Location: 13146-14361 bp Feature: domain Description: PRK1 3381 Location: 1 31 46-1 4361 bp Feature: gene Location: 14393-15754 bp Ori: GCO39706.1 Gene: dcuD_2 Feature: domain Description: DcuC Location: 14396-15728 bp Feature: domain Description: DcuC Location: 1 4396-1 5728 bp Feature: gene Location: 16400-16846 bp Ori: GCO39710.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16706-16808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6706-1 6808 bp Feature: gene Location: 17370-18401 bp Ori: GCO39714.1 Gene: iaaA_2 Feature: domain Description: Asparaginase_2 Location: 17460-18393 bp Feature: domain Description: Asparaginase_2 Location: 1 7460-1 8393 bp Feature: gene Location: 18739-19017 bp Ori: GCO39718.1 Feature: domain Description: DUF5339 Location: 18802-19003 bp Feature: domain Description: DUF5339 Location: 1 8802-1 9003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13381 (peptidase T; Provisional), DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112), DUF5339 (pfam17274)

Seq: BFIH01000051.1 Escherichia coli ECSC038 DNA, sequence051, whole genome shotgun sequence (29629 bp)
Overview 1 RT 1: 245-3660 bp Neighborhood of RT #1 [245, 3665] Tra5 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 245-676 bp Ori: GCO34320.1 Feature: domain Description: Tra5 Location: 251-668 bp Feature: domain Description: Tra5 Location: 2 51-668 bp Feature: gene Location: 1069-2310 bp Ori: GCO34325.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1342-2074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1342 -2 074 bp Feature: domain Description: GIIM Note: maturase Location: 2149-2305 bp Feature: domain Description: GIIM Note: maturase Location: 2 149-2 305 bp Feature: gene Location: 2902-3369 bp Ori: GCO34330.1 Feature: domain Description: PHA02517 Location: 2968-3307 bp Feature: domain Description: PHA02 517 Location: 2 968-3307 bp Feature: gene Location: 3366-3665 bp Ori: GCO34337.1 Gene: insE1 Feature: domain Description: InsE Location: 3396-3660 bp Feature: domain Description: InsE Location: 3396-3660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)