myRT

myRT report for GCA_005383905.1_ASM538390v1

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Seq: BFKI01000002.1 Escherichia coli HH-P001 DNA, sequence002, whole genome shotgun sequence (16518 bp)
Overview 1 RT 1: 7046-13208 bp Neighborhood of RT #1 [7046, 13208] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM HNHc DEDD_Tnp_IS110 Transposase_20 Feature: gene Location: 7046-8167 bp Feature: domain Description: LZ_Tnp_IS66 Location: 7184-7409 bp Feature: domain Description: LZ_Tnp_IS66 Location: 71 84-7409 bp Feature: domain Description: zf-IS66 Location: 7430-7562 bp Feature: domain Description: zf-IS66 Location: 7430-7562 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7607-8144 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7607-81 44 bp Feature: gene Location: 8236-8616 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8239-8461 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8239-8461 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 8482-8593 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 8482-8593 bp Feature: gene Location: 8732-10006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8735-9314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8735-931 4 bp Feature: domain Description: GIIM Note: maturase Location: 9368-9602 bp Feature: domain Description: GIIM Note: maturase Location: 9368-9602 bp Feature: domain Description: HNHc Note: nucleases Location: 9812-9971 bp Feature: domain Description: HNHc Note: nucleases Location: 981 2-9971 bp Feature: gene Location: 11724-12734 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 11742-12192 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 1 742-1 21 92 bp Feature: domain Description: Transposase_20 Location: 12333-12585 bp Feature: domain Description: Transposase_20 Location: 1 2333-1 2585 bp Feature: gene Location: 12930-13208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: BFKI01000158.1 Escherichia coli HH-P001 DNA, sequence158, whole genome shotgun sequence (96430 bp)
Overview 1 RT 1: 91718-94773 bp Neighborhood of RT #1 [91718, 94808] ArdA RVT-GII GIIM HNHc Feature: gene Location: 91718-92314 bp Feature: gene Location: 92778-93278 bp Feature: domain Description: ArdA Location: 92793-93270 bp Feature: domain Description: ArdA Location: 92 793-932 70 bp Feature: gene Location: 93534-94808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93537-94119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93537-94119 bp Feature: domain Description: GIIM Note: maturase Location: 94170-94404 bp Feature: domain Description: GIIM Note: maturase Location: 94170-94404 bp Feature: domain Description: HNHc Note: nucleases Location: 94614-94773 bp Feature: domain Description: HNHc Note: nucleases Location: 94614-94773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: BFKI01000066.1 Escherichia coli HH-P001 DNA, sequence066, whole genome shotgun sequence (6603 bp)
Overview 1 RT 1: 901-2839 bp Neighborhood of RT #1 [901, 2880] RVT-GII HigB-like_toxin antidote_HigA Feature: gene Location: 901-1812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1105-1699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1105-1699 bp Feature: gene Location: 2294-2590 bp Feature: domain Description: HigB-like_toxin Location: 2318-2588 bp Feature: domain Description: HigB-like_toxin Location: 23 18-2588 bp Feature: gene Location: 2599-2880 bp Feature: domain Description: antidote_HigA Location: 2617-2839 bp Feature: domain Description: antidote_HigA Location: 2617-283 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HigB-like_toxin (pfam05015), antidote_HigA (TIGR02607), RVT-GII