myRT

myRT report for GCA_005384445.1_ASM538444v1

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Seq: BFLJ01000017.1 Escherichia coli HUST165 DNA, sequence017, whole genome shotgun sequence (8253 bp)
Overview 1 RT 1: 5321-8002 bp Neighborhood of RT #1 [5321, 8112] RVT-Retrons Feature: gene Location: 5321-6571 bp Feature: gene Location: 6467-6742 bp Feature: gene Location: 7300-8112 bp Ori: GCU25973.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7402-8002 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7402-8002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: BFLJ01000032.1 Escherichia coli HUST165 DNA, sequence032, whole genome shotgun sequence (78023 bp)
Overview 1 RT 1: 53752-58326 bp Neighborhood of RT #1 [53752, 58326] CoiA PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 53752-54399 bp Ori: GCU26757.1 Feature: domain Description: CoiA Location: 53833-53971 bp Feature: domain Description: CoiA Location: 53833-53971 bp Feature: gene Location: 55067-56569 bp Ori: GCU26759.1 Feature: domain Description: PRK13889 Location: 55070-55652 bp Feature: domain Description: PRK13889 Location: 55070-55652 bp Feature: gene Location: 56646-57746 bp Ori: GCU26761.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56787-57339 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56787-57339 bp Feature: gene Location: 57739-58020 bp Ori: GCU26763.1 Gene: ydcN_1 Feature: domain Description: HTH_XRE Location: 57754-57919 bp Feature: domain Description: HTH_XRE Location: 57754-57919 bp Feature: gene Location: 58111-58326 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CoiA (pfam06054), PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)

Seq: BFLJ01000188.1 Escherichia coli HUST165 DNA, sequence188, whole genome shotgun sequence (4246 bp)
Overview 1 RT 1: 1489-2767 bp Neighborhood of RT #1 [1489, 3012] RVT-GII GIIM Feature: gene Location: 1489-3012 bp Ori: GCS26475.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1762-2494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1762-2494 bp Feature: domain Description: GIIM Note: maturase Location: 2569-2767 bp Feature: domain Description: GIIM Note: maturase Location: 2569-2767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)