myRT

myRT report for GCA_005385005.1_ASM538500v1

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Seq: BFML01000036.1 Escherichia coli JML014 DNA, sequence036, whole genome shotgun sequence (79320 bp)
Overview 1 RT 1: 15239-21581 bp Neighborhood of RT #1 [15239, 21581] PRK11388 RVT-Retrons Feature: gene Location: 15239-17158 bp Ori: GCT27279.1 Gene: dhaR Feature: domain Description: PRK11388 Location: 15242-17150 bp Feature: domain Description: PRK1 1 388 Location: 1 5242-1 71 50 bp Feature: gene Location: 17640-17879 bp Feature: gene Location: 18450-20207 bp Ori: GCT27288.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18594-19212 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 8594-1 921 2 bp Feature: gene Location: 20229-20396 bp Feature: gene Location: 20454-21581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional), RVT-Retrons

Seq: BFML01000498.1 Escherichia coli JML014 DNA, sequence498, whole genome shotgun sequence (238809 bp)
Overview 1 RT 1: 232762-238579 bp Neighborhood of RT #1 [232762, 238776] AidA AidA YeeP RVT-UG1 Feature: gene Location: 232762-235608 bp Ori: GCS28029.1 Gene: flu_3 Feature: domain Description: AidA Location: 232801-234763 bp Feature: domain Description: AidA Location: 2 32 801-2 34763 bp Feature: domain Description: AidA Location: 234802-235213 bp Feature: domain Description: AidA Location: 2 34802 -2 352 13 bp Feature: gene Location: 235981-236853 bp Ori: GCS28036.1 Gene: yfjP_3 Feature: domain Description: YeeP Location: 235984-236851 bp Feature: domain Description: YeeP Location: 2 35984-2 36851 bp Feature: gene Location: 237457-238776 bp Ori: GCS28044.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 238069-238579 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 2 38069-2 38579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AidA (COG3468), YeeP (COG3596), RVT-UG1

Seq: BFML01000424.1 Escherichia coli JML014 DNA, sequence424, whole genome shotgun sequence (2710 bp)
Overview 1 RT 1: 112-2272 bp Neighborhood of RT #1 [112, 2418] RVT-GII GIIM PHA02517 HTH_38 Tra8 Feature: gene Location: 112-1293 bp Ori: GCS24774.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118-775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118-775 bp Feature: domain Description: GIIM Note: maturase Location: 850-1048 bp Feature: domain Description: GIIM Note: maturase Location: 850-1048 bp Feature: gene Location: 1488-1841 bp Ori: GCS24777.1 Feature: domain Description: PHA02517 Location: 1491-1836 bp Feature: domain Description: PHA02517 Location: 1491-183 6 bp Feature: gene Location: 1717-2418 bp Ori: GCS24780.1 Feature: domain Description: HTH_38 Location: 1726-1840 bp Feature: domain Description: HTH_3 8 Location: 1726-1840 bp Feature: domain Description: Tra8 Location: 1876-2272 bp Feature: domain Description: Tra8 Location: 1876-2272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_38 (pfam13936), Tra8 (COG2826)