myRT

myRT report for GCA_005385325.1_ASM538532v1

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Seq: BFNB01000006.1 Escherichia coli JML031 DNA, sequence006, whole genome shotgun sequence (227838 bp)
Overview 1 RT 1: 181281-187615 bp Neighborhood of RT #1 [181281, 187623] RVT-Retrons PRK11388 Feature: gene Location: 181281-182408 bp Feature: gene Location: 182466-182633 bp Feature: gene Location: 182655-184412 bp Ori: GCU73070.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 182799-183417 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 82799-1 8341 7 bp Feature: gene Location: 184983-185222 bp Feature: gene Location: 185704-187623 bp Ori: GCU73080.1 Gene: dhaR Feature: domain Description: PRK11388 Location: 185707-187615 bp Feature: domain Description: PRK1 1 388 Location: 1 85707-1 8761 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional)

Seq: BFNB01000153.1 Escherichia coli JML031 DNA, sequence153, whole genome shotgun sequence (45526 bp)
Overview 1 RT 1: 1588-5794 bp Neighborhood of RT #1 [1588, 5805] FaeA PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1588-1809 bp Ori: GCU92342.1 Gene: papI Feature: domain Description: FaeA Location: 1591-1768 bp Feature: domain Description: FaeA Location: 1591-1768 bp Feature: gene Location: 2460-2819 bp Ori: GCU92347.1 Feature: domain Description: PHA02517 Location: 2463-2817 bp Feature: domain Description: PHA02 517 Location: 2 463-2 817 bp Feature: gene Location: 2936-4459 bp Ori: GCU92351.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3209-3941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 09-3941 bp Feature: domain Description: GIIM Note: maturase Location: 4016-4214 bp Feature: domain Description: GIIM Note: maturase Location: 4016-42 14 bp Feature: gene Location: 5051-5290 bp Ori: GCU92355.1 Feature: domain Description: PHA02517 Location: 5054-5225 bp Feature: domain Description: PHA02 517 Location: 5054-52 2 5 bp Feature: gene Location: 5503-5805 bp Ori: GCU92360.1 Feature: domain Description: InsE Location: 5512-5794 bp Feature: domain Description: InsE Location: 5512 -5794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FaeA (pfam04703), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: BFNB01000148.1 Escherichia coli JML031 DNA, sequence148, whole genome shotgun sequence (12283 bp)
Overview 1 RT 1: 6982-12199 bp Neighborhood of RT #1 [6982, 12199] GerD RVT-UG1 Feature: gene Location: 6982-7416 bp Ori: GCU90798.1 Feature: domain Description: GerD Location: 7060-7174 bp Feature: domain Description: GerD Location: 7060-7174 bp Feature: gene Location: 7425-8408 bp Feature: gene Location: 8642-11113 bp Ori: GCU90809.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 9254-9764 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 9254-9764 bp Feature: gene Location: 11867-12199 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GerD (pfam17898), RVT-UG1