myRT

myRT report for GCA_005393465.1_ASM539346v1

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Seq: BGCO01000181.1 (4570 bp)
Overview 1 RT 1: 1240-3989 bp Neighborhood of RT #1 [1240, 4084] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1240-1473 bp Feature: domain Description: DUF905 Location: 1270-1468 bp Feature: domain Description: DUF905 Location: 1 270-1 468 bp Feature: gene Location: 1536-1988 bp Feature: domain Description: PRK13732 Location: 1542-1986 bp Feature: domain Description: PRK1 3732 Location: 1 542-1 986 bp Feature: gene Location: 2183-4084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2450-3281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2450-3281 bp Feature: domain Description: Intron_maturas2 Location: 3395-3653 bp Feature: domain Description: Intron_maturas2 Location: 3395-3653 bp Feature: domain Description: HNHc Note: nucleases Location: 3827-3989 bp Feature: domain Description: HNHc Note: nucleases Location: 3827-3989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: BGCO01000013.1 (81424 bp)
Overview 1 RT 1: 77295-81364 bp Neighborhood of RT #1 [77295, 81423] P Q RVT-AbiP2 Feature: gene Location: 77295-79067 bp Feature: domain Description: P Location: 77322-79053 bp Feature: domain Description: P Location: 7732 2 -79053 bp Feature: gene Location: 79067-80101 bp Feature: domain Description: Q Location: 79070-80093 bp Feature: domain Description: Q Location: 79070-80093 bp Feature: gene Location: 80494-81423 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 80911-81364 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 80911-81364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P (PHA02535), Q (PHA02536), RVT-AbiP2

Seq: BGCO01000055.1 (19077 bp)
Overview 1 RT 1: 728-3779 bp Neighborhood of RT #1 [728, 3904] PHA02517 RVT-GII YkfC HlyC Feature: gene Location: 728-1147 bp Feature: domain Description: PHA02517 Location: 731-1136 bp Feature: domain Description: PHA02517 Location: 73 1-113 6 bp Feature: gene Location: 1317-1448 bp Feature: gene Location: 1628-2329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1634-2189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163 4-2189 bp Feature: gene Location: 2301-3317 bp Feature: domain Description: YkfC Location: 2997-3267 bp Feature: domain Description: YkfC Location: 2997-3 267 bp Feature: gene Location: 3398-3904 bp Feature: domain Description: HlyC Location: 3419-3779 bp Feature: domain Description: HlyC Location: 3 419-3 779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, YkfC (COG3344), HlyC (pfam02794)

Seq: BGCO01000061.1 (111905 bp)
Overview 1 RT 1: 91131-98491 bp Neighborhood of RT #1 [91131, 98511] Peptidase_M78 IncA RVT-UG5 PRK04247 RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like Feature: gene Location: 91131-91679 bp Feature: domain Description: Peptidase_M78 Location: 91284-91647 bp Feature: domain Description: Peptidase_M78 Location: 91284 -9164 7 bp Feature: gene Location: 91679-92353 bp Feature: domain Description: IncA Location: 91970-92312 bp Feature: domain Description: IncA Location: 91970-92312 bp Feature: gene Location: 92802-95819 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 93300-93789 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 93300-93789 bp Feature: gene Location: 95997-97097 bp Feature: domain Description: PRK04247 Location: 96060-96291 bp Feature: domain Description: PRK04 24 7 Location: 96060-96291 bp Feature: gene Location: 97108-98511 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 97336-97615 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 97336-97615 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 97918-98491 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 97918-984 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_M78 (pfam06114), IncA, RVT-UG5, PRK04247 (endonuclease NucS), RMtype1_S_SonII-TRD2-CR2_like (cd17246)

Seq: BGCO01000177.1 (2816 bp)
Overview 1 RT 1: 1-2236 bp Neighborhood of RT #1 [1, 2236] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 1-1677 bp Feature: domain Description: RVT_N Location: 58-295 bp Feature: domain Description: RVT_N Location: 5 8-295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 346-994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 346-994 bp Feature: domain Description: YkfC Location: 1126-1282 bp Feature: domain Description: YkfC Location: 1126-1282 bp Feature: domain Description: HNHc Note: nucleases Location: 1510-1669 bp Feature: domain Description: HNHc Note: nucleases Location: 15 10-1669 bp Feature: gene Location: 1718-1858 bp Feature: gene Location: 1940-2236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)