myRT

myRT report for GCA_005393485.1_ASM539348v1

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Seq: BGCP01000057.1 (14656 bp)
Overview 1 RT 1: 4186-7351 bp Neighborhood of RT #1 [4186, 7362] HlyC YkfC RVT-GII PHA02517 Feature: gene Location: 4186-4692 bp Feature: domain Description: HlyC Location: 4207-4567 bp Feature: domain Description: HlyC Location: 4207-4567 bp Feature: gene Location: 4773-5789 bp Feature: domain Description: YkfC Location: 5469-5739 bp Feature: domain Description: YkfC Location: 5469-5739 bp Feature: gene Location: 5650-6462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5743-6322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5743-6322 bp Feature: gene Location: 6635-6820 bp Feature: gene Location: 6943-7362 bp Feature: domain Description: PHA02517 Location: 6946-7351 bp Feature: domain Description: PHA0251 7 Location: 6946-7351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HlyC (pfam02794), YkfC (COG3344), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: BGCP01000109.1 (203194 bp)
Overview 1 RT 1: 3-5197 bp Neighborhood of RT #1 [3, 5197] met_A_Alw26 RVT-GII RVT-GII Feature: gene Location: 3-1751 bp Feature: domain Description: met_A_Alw26 Location: 162-1527 bp Feature: domain Description: met_A_Alw2 6 Location: 162 -152 7 bp Feature: gene Location: 1817-2017 bp Feature: gene Location: 2829-3092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2835-2955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 835-2 955 bp Feature: gene Location: 3124-3264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3130-3244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3130-32 44 bp Feature: gene Location: 4344-4700 bp Feature: gene Location: 4793-5197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT met_A_Alw26 (TIGR02987), RVT-GII

Seq: BGCP01000066.1 (101033 bp)
Overview 1 RT 1: 57556-63381 bp Neighborhood of RT #1 [57556, 63398] proA PRK09692 RVT-UG7 Psu Feature: gene Location: 57556-58809 bp Feature: domain Description: proA Location: 57583-58774 bp Feature: domain Description: proA Location: 57583 -58774 bp Feature: gene Location: 59164-60348 bp Feature: domain Description: PRK09692 Location: 59170-60325 bp Feature: domain Description: PRK09692 Location: 59170-603 25 bp Feature: gene Location: 60341-61969 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 60749-61178 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 60749-61178 bp Feature: gene Location: 61966-62706 bp Feature: gene Location: 63009-63398 bp Feature: domain Description: Psu Location: 63012-63381 bp Feature: domain Description: Psu Location: 63 012-63 3 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: BGCP01000130.1 (2294 bp)
Overview 1 RT 1: 86-2291 bp Neighborhood of RT #1 [86, 2291] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 86-1810 bp Feature: domain Description: RVT_N Location: 143-380 bp Feature: domain Description: RVT_N Location: 14 3-380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-1079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 31-1079 bp Feature: domain Description: YkfC Location: 1211-1367 bp Feature: domain Description: YkfC Location: 1211-1367 bp Feature: domain Description: HNHc Note: nucleases Location: 1595-1754 bp Feature: domain Description: HNHc Note: nucleases Location: 1595-1754 bp Feature: gene Location: 1851-1991 bp Feature: gene Location: 2073-2291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)