myRT

myRT report for GCA_005396445.1_ASM539644v1

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Seq: BGHN01000033.1 (5026 bp)
Overview 1 RT 1: 1-3841 bp Neighborhood of RT #1 [1, 3841] HTH_38 HTH_38 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1-318 bp Feature: domain Description: HTH_38 Location: 10-124 bp Feature: domain Description: HTH_38 Location: 1 0-1 24 bp Feature: domain Description: HTH_38 Location: 175-295 bp Feature: domain Description: HTH_38 Location: 1 75-295 bp Feature: gene Location: 467-877 bp Feature: domain Description: PHA02517 Location: 473-812 bp Feature: domain Description: PHA0251 7 Location: 473-81 2 bp Feature: gene Location: 1469-2992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1742-2474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 742-2474 bp Feature: domain Description: GIIM Note: maturase Location: 2549-2747 bp Feature: domain Description: GIIM Note: maturase Location: 2549-2747 bp Feature: gene Location: 3169-3555 bp Feature: domain Description: PHA02517 Location: 3172-3553 bp Feature: domain Description: PHA0251 7 Location: 31 72-3553 bp Feature: gene Location: 3521-3841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: BGHN01000097.1 (63652 bp)
Overview 1 RT 1: 1119-6484 bp Neighborhood of RT #1 [1119, 6519] RVT-UG7 PRK09692 proA Feature: gene Location: 1119-1259 bp Feature: gene Location: 1369-2109 bp Feature: gene Location: 2106-3734 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2514-2943 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2 514-2 943 bp Feature: gene Location: 3727-4911 bp Feature: domain Description: PRK09692 Location: 3733-4888 bp Feature: domain Description: PRK09692 Location: 3733-4888 bp Feature: gene Location: 5266-6519 bp Feature: domain Description: proA Location: 5293-6484 bp Feature: domain Description: proA Location: 52 93-6484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, PRK09692 (Integrase; provisional), proA (TIGR00407)

Seq: BGHN01000092.1 (165556 bp)
Overview 1 RT 1: 41607-46671 bp Neighborhood of RT #1 [41607, 46676] RVT-Retrons Q P Feature: gene Location: 41607-41774 bp Feature: gene Location: 41993-42742 bp Feature: gene Location: 42892-43866 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43054-43603 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43 054-43 603 bp Feature: gene Location: 43882-44910 bp Feature: domain Description: Q Location: 43888-44905 bp Feature: domain Description: Q Location: 43 888-44905 bp Feature: gene Location: 44910-46676 bp Feature: domain Description: P Location: 44937-46671 bp Feature: domain Description: P Location: 4493 7-46671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Q (PHA02536), P (PHA02535)

Seq: BGHN01000089.1 (7814 bp)
Overview 1 RT 1: 728-3779 bp Neighborhood of RT #1 [728, 3904] PHA02517 RVT-GII YkfC HlyC Feature: gene Location: 728-1147 bp Feature: domain Description: PHA02517 Location: 731-1136 bp Feature: domain Description: PHA02517 Location: 731-1136 bp Feature: gene Location: 1270-1455 bp Feature: gene Location: 1628-2329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1634-2189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1634 -2189 bp Feature: gene Location: 2301-3317 bp Feature: domain Description: YkfC Location: 2997-3267 bp Feature: domain Description: YkfC Location: 2997-3267 bp Feature: gene Location: 3398-3904 bp Feature: domain Description: HlyC Location: 3419-3779 bp Feature: domain Description: HlyC Location: 34 19-3779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, YkfC (COG3344), HlyC (pfam02794)