myRT

myRT report for GCA_005397545.1_ASM539754v1

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Seq: BGJN01000039.1 (5664 bp)
Overview 1 RT 1: 2-2234 bp Neighborhood of RT #1 [2, 2605] RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 2-997 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8-461 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 8-461 bp Feature: gene Location: 1110-1694 bp Feature: domain Description: Caudo_TAP Location: 1326-1683 bp Feature: domain Description: Caudo_TAP Location: 1 326-1 683 bp Feature: gene Location: 1703-2605 bp Feature: domain Description: Macro_Appr_pase Location: 1721-2234 bp Feature: domain Description: Macro_Appr_pase Location: 1 721 -2234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: BGJN01000144.1 (29636 bp)
Overview 1 RT 1: 19451-23179 bp Neighborhood of RT #1 [19451, 23184] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 19451-19657 bp Feature: gene Location: 19991-20200 bp Feature: gene Location: 20335-22236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20602-21433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0602 -2 1433 bp Feature: domain Description: Intron_maturas2 Location: 21547-21805 bp Feature: domain Description: Intron_maturas2 Location: 2 1547-2 1805 bp Feature: domain Description: HNHc Note: nucleases Location: 21979-22141 bp Feature: domain Description: HNHc Note: nucleases Location: 2 1979-2 2 141 bp Feature: gene Location: 22431-22883 bp Feature: domain Description: PRK13732 Location: 22437-22881 bp Feature: domain Description: PRK13732 Location: 2 2 437-2 2 881 bp Feature: gene Location: 22951-23184 bp Feature: domain Description: DUF905 Location: 22981-23179 bp Feature: domain Description: DUF905 Location: 2 2 981-2 3179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: BGJN01000126.1 (12086 bp)
Overview 1 RT 1: 2-3513 bp Neighborhood of RT #1 [2, 3566] PHA02517 RVT-GII GIIM PHA02517 autotrans_barl Feature: gene Location: 2-268 bp Feature: domain Description: PHA02517 Location: 5-203 bp Feature: domain Description: PHA02517 Location: 5-203 bp Feature: gene Location: 860-2383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1133-1865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113 3 -1865 bp Feature: domain Description: GIIM Note: maturase Location: 1940-2138 bp Feature: domain Description: GIIM Note: maturase Location: 1940-213 8 bp Feature: gene Location: 2560-2946 bp Feature: domain Description: PHA02517 Location: 2563-2944 bp Feature: domain Description: PHA02517 Location: 2563 -2944 bp Feature: gene Location: 2949-3566 bp Feature: domain Description: autotrans_barl Location: 3072-3513 bp Feature: domain Description: autotrans_barl Location: 3 072-3 513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), autotrans_barl (TIGR01414)

Seq: BGJN01000025.1 (777 bp)
Overview 1 RT 1: 3-519 bp Neighborhood of RT #1 [3, 776] RVT-Retrons Feature: gene Location: 3-776 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30-519 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30-519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons