myRT

myRT report for GCA_005399405.1_ASM539940v1

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Seq: BICC01000048.1 (47821 bp)
Overview 1 RT 1: 6177-9900 bp Neighborhood of RT #1 [6177, 9905] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 6177-6383 bp Feature: gene Location: 6717-6926 bp Feature: gene Location: 7061-8962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7328-8159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7328-81 59 bp Feature: domain Description: Intron_maturas2 Location: 8273-8531 bp Feature: domain Description: Intron_maturas2 Location: 8273-8531 bp Feature: domain Description: HNHc Note: nucleases Location: 8705-8867 bp Feature: domain Description: HNHc Note: nucleases Location: 8705-8867 bp Feature: gene Location: 9157-9609 bp Feature: domain Description: PRK13732 Location: 9163-9607 bp Feature: domain Description: PRK1 3732 Location: 91 63-9607 bp Feature: gene Location: 9672-9905 bp Feature: domain Description: DUF905 Location: 9702-9900 bp Feature: domain Description: DUF905 Location: 9702-9900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: BICC01000053.1 (53611 bp)
Overview 1 RT 1: 45583-53608 bp Neighborhood of RT #1 [45583, 53608] mutS1 INT_Rci_Hp1_C INT_P4_C RVT-UG8 Feature: gene Location: 45583-48165 bp Feature: domain Description: mutS1 Location: 45634-48154 bp Feature: domain Description: mutS1 Location: 45634-48154 bp Feature: gene Location: 48310-49770 bp Feature: domain Description: INT_Rci_Hp1_C Location: 48685-48892 bp Feature: domain Description: INT_Rci_Hp1_C Location: 48685-48892 bp Feature: domain Description: INT_P4_C Location: 49111-49648 bp Feature: domain Description: INT_P4_C Location: 49111-49648 bp Feature: gene Location: 51026-53044 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 51596-52046 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 51596-52 046 bp Feature: gene Location: 53471-53608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mutS1 (TIGR01070), INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), RVT-UG8

Seq: BICC01000041.1 (5962 bp)
Overview 1 RT 1: 3629-5804 bp Neighborhood of RT #1 [3629, 5830] PRK13699 RVT_N RVT-GII Feature: gene Location: 3629-4282 bp Feature: domain Description: PRK13699 Location: 3674-4280 bp Feature: domain Description: PRK13 699 Location: 3 674-4280 bp Feature: gene Location: 4389-4589 bp Feature: gene Location: 4862-5830 bp Feature: domain Description: RVT_N Location: 4916-5159 bp Feature: domain Description: RVT_N Location: 4916-5159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5204-5804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5204-5804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII

Seq: BICC01000026.1 (44095 bp)
Overview 1 RT 1: 34994-40757 bp Neighborhood of RT #1 [34994, 40771] prfC PRK10597 RVT-Retrons TIR_2 COG5281 Caudo_TAP Phage_tail_T Feature: gene Location: 34994-36580 bp Feature: domain Description: prfC Location: 35012-36578 bp Feature: domain Description: prfC Location: 35012-36578 bp Feature: gene Location: 36800-37060 bp Feature: domain Description: PRK10597 Location: 36803-37043 bp Feature: domain Description: PRK10597 Location: 36803-3704 3 bp Feature: gene Location: 37422-39026 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37713-38304 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37713-38304 bp Feature: domain Description: TIR_2 Location: 38631-38919 bp Feature: domain Description: TIR_2 Location: 38631-38919 bp Feature: gene Location: 39469-40470 bp Feature: domain Description: COG5281 Location: 39766-40018 bp Feature: domain Description: COG5281 Location: 39766-4 0018 bp Feature: domain Description: Caudo_TAP Location: 40102-40459 bp Feature: domain Description: Caudo_TAP Location: 4 0102-4 04 59 bp Feature: gene Location: 40442-40771 bp Feature: domain Description: Phage_tail_T Location: 40460-40757 bp Feature: domain Description: Phage_tail_T Location: 4 04 60-4 0757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), COG5281 (Phage-related minor tail protein ), Caudo_TAP (pfam02413), Phage_tail_T (pfam06223)