myRT

myRT report for GCA_005402765.2_ASM540276v2

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Seq: BJCD01000011.1 Planktothrix agardhii CCAP 1459/11A DNA, sequence029, whole genome shotgun sequence (79540 bp)
Overview 1 RT 1: 9124-12203 bp Neighborhood of RT #1 [9124, 12517] PRK07459 RVT_N RVT-GII GIIM McrA PRK07459 TPR Feature: gene Location: 9124-9267 bp Feature: domain Description: PRK07459 Location: 9193-9259 bp Feature: domain Description: PRK07459 Location: 91 93-9259 bp Feature: gene Location: 9419-9643 bp Feature: gene Location: 9890-11641 bp Feature: RT Description: RVT_N Location: 9923-10169 bp Feature: RT Description: RVT_N Location: 9923-1 01 69 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10211-10877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 021 1 -1 0877 bp Feature: domain Description: GIIM Note: maturase Location: 10982-11216 bp Feature: domain Description: GIIM Note: maturase Location: 1 0982-1 1 21 6 bp Feature: domain Description: McrA Location: 11264-11558 bp Feature: domain Description: McrA Location: 1 1 264-1 1 558 bp Feature: gene Location: 11825-11965 bp Feature: domain Description: PRK07459 Location: 11831-11942 bp Feature: domain Description: PRK07459 Location: 1 1 831 -1 1 942 bp Feature: gene Location: 11978-12517 bp Feature: domain Description: TPR Location: 12011-12203 bp Feature: domain Description: TPR Location: 1 201 1 -1 2203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07459 (single-stranded DNA-binding protein; Provisional), TPR (smart00028), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: BJCD01000022.1 Planktothrix agardhii CCAP 1459/11A DNA, sequence083, whole genome shotgun sequence (8451 bp)
Overview 1 RT 1: 2-3753 bp Neighborhood of RT #1 [2, 3773] RVT-GII GIIM HNH Crp SMC_prok_B Smc Feature: gene Location: 2-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-140 bp Feature: domain Description: GIIM Note: maturase Location: 245-476 bp Feature: domain Description: GIIM Note: maturase Location: 2 45-476 bp Feature: domain Description: HNH Note: nucleases Location: 689-824 bp Feature: domain Description: HNH Note: nucleases Location: 689-82 4 bp Feature: gene Location: 1223-1984 bp Feature: domain Description: Crp Location: 1469-1913 bp Feature: domain Description: Crp Location: 1469-1913 bp Feature: gene Location: 2034-3773 bp Feature: domain Description: SMC_prok_B Location: 2172-2982 bp Feature: domain Description: SMC_prok_B Location: 2 172 -2 982 bp Feature: domain Description: Smc Location: 3396-3753 bp Feature: domain Description: Smc Location: 3396-3753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Crp (pfam00325), SMC_prok_B (TIGR02168), Smc (COG1196), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: BJCD01000039.1 Planktothrix agardhii CCAP 1459/11A DNA, sequence015, whole genome shotgun sequence (125022 bp)
Overview 1 RT 1: 123355-125019 bp Neighborhood of RT #1 [123355, 125021] RVT_N RVT-GII Feature: gene Location: 123355-123516 bp Feature: gene Location: 123559-123699 bp Feature: gene Location: 124512-125021 bp Feature: RT Description: RVT_N Location: 124551-124797 bp Feature: RT Description: RVT_N Location: 124551-124797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124839-125019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12483 9-125019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: BJCD01000041.1 Planktothrix agardhii CCAP 1459/11A DNA, sequence017, whole genome shotgun sequence (114153 bp)
Overview 1 RT 1: 31746-39431 bp Neighborhood of RT #1 [31746, 39511] InsQ TlcC HEAT_2 HEAT_2 HEAT_2 RVT_N RVT-GII GIIM McrA Crp YneE Feature: gene Location: 31746-32138 bp Feature: domain Description: InsQ Location: 31761-31863 bp Feature: domain Description: InsQ Location: 31761-31863 bp Feature: gene Location: 32395-35439 bp Feature: domain Description: TlcC Location: 32845-33775 bp Feature: domain Description: TlcC Location: 3284 5-33775 bp Feature: domain Description: HEAT_2 Location: 34261-34429 bp Feature: domain Description: HEAT_2 Location: 34 261-34 4 29 bp Feature: domain Description: HEAT_2 Location: 34435-34606 bp Feature: domain Description: HEAT_2 Location: 34 4 35-34 606 bp Feature: domain Description: HEAT_2 Location: 35299-35413 bp Feature: domain Description: HEAT_2 Location: 35299-354 13 bp Feature: gene Location: 36086-37825 bp Feature: RT Description: RVT_N Location: 36128-36374 bp Feature: RT Description: RVT_N Location: 36128-36374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36416-37085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 364 16-37085 bp Feature: domain Description: GIIM Note: maturase Location: 37187-37385 bp Feature: domain Description: GIIM Note: maturase Location: 37187-37385 bp Feature: domain Description: McrA Location: 37490-37805 bp Feature: domain Description: McrA Location: 374 90-37805 bp Feature: gene Location: 38009-38494 bp Feature: domain Description: Crp Location: 38045-38423 bp Feature: domain Description: Crp Location: 3804 5-384 23 bp Feature: gene Location: 38540-39511 bp Feature: domain Description: YneE Location: 38555-39431 bp Feature: domain Description: YneE Location: 38555-394 31 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), TlcC (COG3202), HEAT_2 (pfam13646), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), Crp (pfam00325), YneE (COG3781)

Seq: BJCD01000050.1 Planktothrix agardhii CCAP 1459/11A DNA, sequence027, whole genome shotgun sequence (80414 bp)
Overview 1 RT 1: 3-2741 bp Neighborhood of RT #1 [3, 2926] RVT-GII GIIM HNH tcm_partner SplB Feature: gene Location: 3-1256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-5 13 bp Feature: domain Description: GIIM Note: maturase Location: 621-846 bp Feature: domain Description: GIIM Note: maturase Location: 621-846 bp Feature: domain Description: HNH Note: nucleases Location: 1062-1197 bp Feature: domain Description: HNH Note: nucleases Location: 1062-1197 bp Feature: gene Location: 1350-1943 bp Feature: domain Description: tcm_partner Location: 1404-1542 bp Feature: domain Description: tcm_partner Location: 1404-15 42 bp Feature: gene Location: 1979-2926 bp Feature: domain Description: SplB Location: 2015-2741 bp Feature: domain Description: SplB Location: 2015 -2741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT tcm_partner (TIGR04474), SplB, RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: BJCD01000060.1 Planktothrix agardhii CCAP 1459/11A DNA, sequence044, whole genome shotgun sequence (49574 bp)
Overview 1 RT 1: 45596-48831 bp Neighborhood of RT #1 [45596, 49343] RVT-GII InsQ PRC PRC Feature: gene Location: 45596-45793 bp Feature: gene Location: 45907-46275 bp Feature: gene Location: 46525-48324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46528-47122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46 528-47122 bp Feature: domain Description: InsQ Location: 47260-48229 bp Feature: domain Description: InsQ Location: 4726 0-48229 bp Feature: gene Location: 48342-49343 bp Feature: domain Description: PRC Location: 48366-48573 bp Feature: domain Description: PRC Location: 4836 6 -48573 bp Feature: domain Description: PRC Location: 48600-48831 bp Feature: domain Description: PRC Location: 486 00-48831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsQ (COG0675), PRC (pfam05239)

Seq: BJCD01000063.1 Planktothrix agardhii CCAP 1459/11A DNA, sequence047, whole genome shotgun sequence (48215 bp)
Overview 1 RT 1: 15628-23939 bp Neighborhood of RT #1 [15628, 24088] COG3825 YfmG RVT-DGRs lpxB marine_srt_targ Feature: gene Location: 15628-16707 bp Feature: domain Description: COG3825 Location: 15658-16702 bp Feature: domain Description: COG3825 Location: 15658-167 02 bp Feature: gene Location: 16820-18571 bp Feature: domain Description: YfmG Location: 17390-18536 bp Feature: domain Description: YfmG Location: 17 390-18536 bp Feature: gene Location: 18988-20082 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19228-19936 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19228-19936 bp Feature: gene Location: 20439-21659 bp Feature: domain Description: lpxB Location: 20463-21630 bp Feature: domain Description: lpxB Location: 20463-21630 bp Feature: gene Location: 21935-24088 bp Feature: domain Description: marine_srt_targ Location: 22178-23939 bp Feature: domain Description: marine_srt_targ Location: 2217 8-23939 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3825 (CoxE;Uncharacterized conserved protein, contains von Willebrand factor type A (vWA) domain ), YfmG (COG1262), RVT-DGRs, lpxB (TIGR00215), marine_srt_targ (TIGR03788)

Seq: BJCD01000065.1 Planktothrix agardhii CCAP 1459/11A DNA, sequence049, whole genome shotgun sequence (47369 bp)
Overview 1 RT 1: 43857-47300 bp Neighborhood of RT #1 [43857, 47368] PRK00174 RVT-GII GIIM McrA Feature: gene Location: 43857-44003 bp Feature: gene Location: 44231-45820 bp Feature: domain Description: PRK00174 Location: 44234-45809 bp Feature: domain Description: PRK00174 Location: 44234-458 09 bp Feature: gene Location: 46190-47368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46193-46622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46193-46622 bp Feature: domain Description: GIIM Note: maturase Location: 46721-46922 bp Feature: domain Description: GIIM Note: maturase Location: 46721-46922 bp Feature: domain Description: McrA Location: 47009-47300 bp Feature: domain Description: McrA Location: 47009-47300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00174 (acetyl-CoA synthetase; Provisional), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: BJCD01000079.1 Planktothrix agardhii CCAP 1459/11A DNA, sequence063, whole genome shotgun sequence (21281 bp)
Overview 1 RT 1: 2-3089 bp Neighborhood of RT #1 [2, 3097] RVT-GII GIIM McrA HNH_3 NrdF Feature: gene Location: 2-1168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-428 bp Feature: domain Description: GIIM Note: maturase Location: 527-749 bp Feature: domain Description: GIIM Note: maturase Location: 527-749 bp Feature: domain Description: McrA Location: 812-1106 bp Feature: domain Description: McrA Location: 812-1106 bp Feature: gene Location: 1874-2623 bp Feature: domain Description: HNH_3 Location: 2015-2147 bp Feature: domain Description: HNH_3 Location: 2015-2147 bp Feature: gene Location: 2696-3097 bp Feature: domain Description: NrdF Location: 2708-3089 bp Feature: domain Description: NrdF Location: 2708-3089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH_3 (pfam13392), RVT-GII, GIIM (pfam08388), McrA (COG4058), NrdF (COG0208)

Seq: BJCD01000103.1 Planktothrix agardhii CCAP 1459/11A DNA, sequence099, whole genome shotgun sequence (2524 bp)
Overview 1 RT 1: 688-2359 bp Neighborhood of RT #1 [688, 2415] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 688-2415 bp Feature: RT Description: RVT_N Location: 733-979 bp Feature: RT Description: RVT_N Location: 733-979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1021-1690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10 21-1690 bp Feature: domain Description: GIIM Note: maturase Location: 1789-2011 bp Feature: domain Description: GIIM Note: maturase Location: 1789-2011 bp Feature: domain Description: HNHc Note: nucleases Location: 2206-2359 bp Feature: domain Description: HNHc Note: nucleases Location: 2206-2359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: BJCD01000104.1 Planktothrix agardhii CCAP 1459/11A DNA, sequence100, whole genome shotgun sequence (2476 bp)
Overview 1 RT 1: 628-2299 bp Neighborhood of RT #1 [628, 2367] RVT_N RVT-GII GIIM McrA Feature: gene Location: 628-2367 bp Feature: RT Description: RVT_N Location: 670-916 bp Feature: RT Description: RVT_N Location: 670-916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958-1627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958-1627 bp Feature: domain Description: GIIM Note: maturase Location: 1726-1927 bp Feature: domain Description: GIIM Note: maturase Location: 1726-1927 bp Feature: domain Description: McrA Location: 2029-2299 bp Feature: domain Description: McrA Location: 2029-2299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: BJCD01000105.1 Planktothrix agardhii CCAP 1459/11A DNA, sequence101, whole genome shotgun sequence (2476 bp)
Overview 1 RT 1: 135-2299 bp Neighborhood of RT #1 [135, 2299] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 135-1850 bp Feature: RT Description: RVT_N Location: 177-423 bp Feature: RT Description: RVT_N Location: 177-423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1134 bp Feature: domain Description: GIIM Note: maturase Location: 1233-1434 bp Feature: domain Description: GIIM Note: maturase Location: 12 33-1434 bp Feature: domain Description: HNHc Note: nucleases Location: 1653-1803 bp Feature: domain Description: HNHc Note: nucleases Location: 1653-1803 bp Feature: gene Location: 2072-2299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: BJCD01000109.1 Planktothrix agardhii CCAP 1459/11A DNA, sequence108, whole genome shotgun sequence (1341 bp)
Overview 1 RT 1: 1-1165 bp Neighborhood of RT #1 [1, 1227] RVT-GII RVT-GII GIIM McrA Feature: gene Location: 1-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292-487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292-487 bp Feature: domain Description: GIIM Note: maturase Location: 589-787 bp Feature: domain Description: GIIM Note: maturase Location: 589-787 bp Feature: domain Description: McrA Location: 889-1165 bp Feature: domain Description: McrA Location: 889-1165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: BJCD01000118.1 Planktothrix agardhii CCAP 1459/11A DNA, sequence118, whole genome shotgun sequence (878 bp)
Overview 1 RT 1: 1-727 bp Neighborhood of RT #1 [1, 726] RVT_N RVT-GII Feature: gene Location: 1-726 bp Feature: RT Description: RVT_N Location: 40-286 bp Feature: RT Description: RVT_N Location: 40-286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394-727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394-727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: BJCD01000131.1 Planktothrix agardhii CCAP 1459/11A DNA, sequence131, whole genome shotgun sequence (645 bp)
Overview 1 RT 1: 3-465 bp Neighborhood of RT #1 [3, 644] RVT-GII GIIM Feature: gene Location: 3-644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-141 bp Feature: domain Description: GIIM Note: maturase Location: 243-465 bp Feature: domain Description: GIIM Note: maturase Location: 243-465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BJCD01000142.1 Planktothrix agardhii CCAP 1459/11A DNA, sequence142, whole genome shotgun sequence (506 bp)
Overview 1 RT 1: 3-465 bp Neighborhood of RT #1 [3, 503] RVT-GII Feature: gene Location: 3-503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BJCD01000145.1 Planktothrix agardhii CCAP 1459/11A DNA, sequence145, whole genome shotgun sequence (467 bp)
Overview 1 RT 1: 1-457 bp Neighborhood of RT #1 [1, 465] RVT_N RVT-GII Feature: gene Location: 1-465 bp Feature: RT Description: RVT_N Location: 4-145 bp Feature: RT Description: RVT_N Location: 4-145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187-457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187-457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII