myRT

myRT report for GCA_005403705.1_ASM540370v1

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Seq: BJCV01000019.1 (79800 bp)
Overview 1 RT 1: 24653-26348 bp Neighborhood of RT #1 [24653, 26348] group_II_RT_mat RVT-GII GIIM Feature: gene Location: 24653-24874 bp Feature: gene Location: 24915-25229 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 24957-25164 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 24957-251 64 bp Feature: gene Location: 25338-25472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25347-25458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25347-25458 bp Feature: gene Location: 25664-26056 bp Feature: domain Description: GIIM Note: maturase Location: 25775-25964 bp Feature: domain Description: GIIM Note: maturase Location: 25775-25964 bp Feature: gene Location: 26181-26348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388)

Seq: BJCV01000072.1 (16592 bp)
Overview 1 RT 1: 13177-16591 bp Neighborhood of RT #1 [13177, 16591] RhsA YhhI YhhI RVT-GII GIIM YhhI Feature: gene Location: 13177-13359 bp Feature: domain Description: RhsA Location: 13180-13345 bp Feature: domain Description: RhsA Location: 13180-13345 bp Feature: gene Location: 13370-14119 bp Feature: domain Description: YhhI Location: 13436-13760 bp Feature: domain Description: YhhI Location: 13436-13760 bp Feature: domain Description: YhhI Location: 13781-14021 bp Feature: domain Description: YhhI Location: 13781-1402 1 bp Feature: gene Location: 14130-15485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14412-15096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14412 -15096 bp Feature: domain Description: GIIM Note: maturase Location: 15177-15399 bp Feature: domain Description: GIIM Note: maturase Location: 15177-15399 bp Feature: gene Location: 15943-16428 bp Feature: domain Description: YhhI Location: 15946-16309 bp Feature: domain Description: YhhI Location: 15946-16309 bp Feature: gene Location: 16430-16591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhsA (COG3209), YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: BJCV01000016.1 (88869 bp)
Overview 1 RT 1: 72110-78189 bp Neighborhood of RT #1 [72110, 78206] YjeJ DUF4156 RVT_N RVT-GII GIIM HNHc groEL Feature: gene Location: 72110-72979 bp Feature: domain Description: YjeJ Location: 72113-72959 bp Feature: domain Description: YjeJ Location: 72113 -72959 bp Feature: gene Location: 73184-73537 bp Feature: domain Description: DUF4156 Location: 73253-73529 bp Feature: domain Description: DUF4156 Location: 73 253 -73 529 bp Feature: gene Location: 73796-75463 bp Feature: domain Description: RVT_N Location: 73859-74093 bp Feature: domain Description: RVT_N Location: 73 859-74093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74147-74792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74147-74792 bp Feature: domain Description: GIIM Note: maturase Location: 74846-75077 bp Feature: domain Description: GIIM Note: maturase Location: 74846-75077 bp Feature: domain Description: HNHc Note: nucleases Location: 75287-75449 bp Feature: domain Description: HNHc Note: nucleases Location: 75287-75449 bp Feature: gene Location: 75893-76177 bp Feature: gene Location: 76560-78206 bp Feature: domain Description: groEL Location: 76566-78189 bp Feature: domain Description: groEL Location: 76566-78189 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjeJ (pfam15922), DUF4156 (pfam13698), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852)

Seq: BJCV01000073.1 (15828 bp)
Overview 1 RT 1: 11994-15113 bp Neighborhood of RT #1 [11994, 15115] PRK10954 RVT-UG4 PRK09413 Feature: gene Location: 11994-12485 bp Feature: domain Description: PRK10954 Location: 12060-12435 bp Feature: domain Description: PRK10954 Location: 12060-124 35 bp Feature: gene Location: 12649-12801 bp Feature: gene Location: 12875-13972 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 13232-13676 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 13232-13676 bp Feature: gene Location: 13896-14738 bp Feature: gene Location: 14747-15115 bp Feature: domain Description: PRK09413 Location: 14762-15113 bp Feature: domain Description: PRK094 13 Location: 14 762-15113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10954 (thiol:disulfide interchange protein DsbA), RVT-UG4, PRK09413 (IS2 repressor TnpA; Reviewed)