myRT

myRT report for GCA_005405945.1_ASM540594v1

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Seq: BJHW01000002.1 (2463182 bp)
Overview 1 RT 1: 2225198-2232744 bp Neighborhood of RT #1 [2225198, 2232836] AlkB HTH_32 RVT_N RVT-GII RVT-GII GIIM RVT-GII GIIM DDE_3 PBP2_LTTR_substrate Feature: gene Location: 2225198-2225830 bp Feature: domain Description: AlkB Location: 2225351-2225768 bp Feature: domain Description: AlkB Location: 2225351 -2225768 bp Feature: gene Location: 2225887-2226501 bp Feature: domain Description: HTH_32 Location: 2226052-2226289 bp Feature: domain Description: HTH_32 Location: 2226052-2226289 bp Feature: gene Location: 2227507-2228301 bp Feature: domain Description: RVT_N Location: 2227609-2227846 bp Feature: domain Description: RVT_N Location: 2227609-2227846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2227906-2228281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2227906-2228281 bp Feature: gene Location: 2228394-2229323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2228397-2228562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2228397-2228562 bp Feature: domain Description: GIIM Note: maturase Location: 2228616-2228847 bp Feature: domain Description: GIIM Note: maturase Location: 222861 6-2228847 bp Feature: gene Location: 2229408-2230916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2229792-2230473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2229792-2230473 bp Feature: domain Description: GIIM Note: maturase Location: 2230545-2230776 bp Feature: domain Description: GIIM Note: maturase Location: 2230545-2230776 bp Feature: gene Location: 2231137-2231703 bp Feature: domain Description: DDE_3 Location: 2231140-2231581 bp Feature: domain Description: DDE_3 Location: 2231 1 40-2231 581 bp Feature: gene Location: 2232324-2232836 bp Feature: domain Description: PBP2_LTTR_substrate Location: 2232330-2232744 bp Feature: domain Description: PBP2_LTTR_substrate Location: 2232330-2232744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlkB (COG3145), HTH_32 (pfam13565), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358), PBP2_LTTR_substrate (cd05466)

Seq: BJHW01000001.1 (9233450 bp)
Overview 1 RT 1: 826821-831821 bp 2 RT 2: 868171-873097 bp 3 RT 3: 2686740-2694901 bp 4 RT 4: 2971479-2976390 bp Neighborhood of RT #1 [826821, 831821] ParAB_family ParAB_family RVT-GII GIIM Neighborhood of RT #2 [868171, 873114] AcrR DDE_Tnp_1 RVT_N RVT-GII GIIM DDE_Tnp_4 Neighborhood of RT #3 [2686740, 2694901] DDE_Tnp_1_4 hydroxyacyl_CoA_DH RVT_N RVT-GII GIIM CypX Neighborhood of RT #4 [2971479, 2976668] RVT-GII GIIM DUF4096 AA_permease_2 Feature: gene Location: 826821-827024 bp Feature: gene Location: 827021-827656 bp Feature: domain Description: ParAB_family Location: 827036-827171 bp Feature: domain Description: ParAB_family Location: 82 7036-82 7171 bp Feature: domain Description: ParAB_family Location: 827297-827486 bp Feature: domain Description: ParAB_family Location: 82 72 97-82 7486 bp Feature: gene Location: 828886-830316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829207-829891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 92 07-82 9891 bp Feature: domain Description: GIIM Note: maturase Location: 829978-830194 bp Feature: domain Description: GIIM Note: maturase Location: 82 9978-830194 bp Feature: gene Location: 830686-831033 bp Feature: gene Location: 831354-831821 bp Feature: gene Location: 868171-868776 bp Feature: domain Description: AcrR Location: 868210-868741 bp Feature: domain Description: AcrR Location: 8682 10-868741 bp Feature: gene Location: 868851-869255 bp Feature: domain Description: DDE_Tnp_1 Location: 868887-869187 bp Feature: domain Description: DDE_Tnp_1 Location: 868887-869187 bp Feature: gene Location: 869857-871650 bp Feature: domain Description: RVT_N Location: 869941-870178 bp Feature: domain Description: RVT_N Location: 869941-870178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 870238-870895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8702 38-870895 bp Feature: domain Description: GIIM Note: maturase Location: 870949-871180 bp Feature: domain Description: GIIM Note: maturase Location: 870949-871180 bp Feature: gene Location: 871795-872196 bp Feature: gene Location: 872281-873114 bp Feature: domain Description: DDE_Tnp_4 Location: 872626-873097 bp Feature: domain Description: DDE_Tnp_4 Location: 872 62 6-873097 bp Feature: gene Location: 2686740-2687021 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2686752-2687007 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2 686752 -2 687007 bp Feature: gene Location: 2688695-2689228 bp Feature: domain Description: hydroxyacyl_CoA_DH Location: 2688701-2689226 bp Feature: domain Description: hydroxyacyl_CoA_DH Location: 2 688701-2 6892 2 6 bp Feature: gene Location: 2690355-2692142 bp Feature: domain Description: RVT_N Location: 2690427-2690664 bp Feature: domain Description: RVT_N Location: 2 69042 7-2 690664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2690724-2691381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 69072 4-2 691381 bp Feature: domain Description: GIIM Note: maturase Location: 2691435-2691666 bp Feature: domain Description: GIIM Note: maturase Location: 2 691435-2 691666 bp Feature: gene Location: 2693422-2694600 bp Feature: domain Description: CypX Location: 2693446-2694598 bp Feature: domain Description: CypX Location: 2 693446-2 694598 bp Feature: gene Location: 2694734-2694901 bp Feature: gene Location: 2971479-2972195 bp Feature: gene Location: 2972238-2972396 bp Feature: gene Location: 2972419-2973003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2972425-2972566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 972 42 5-2 972 566 bp Feature: domain Description: GIIM Note: maturase Location: 2972638-2972860 bp Feature: domain Description: GIIM Note: maturase Location: 2 972 638-2 972 860 bp Feature: gene Location: 2974209-2974490 bp Feature: domain Description: DUF4096 Location: 2974251-2974416 bp Feature: domain Description: DUF4096 Location: 2 9742 51-2 974416 bp Feature: gene Location: 2975313-2976668 bp Feature: domain Description: AA_permease_2 Location: 2975325-2976390 bp Feature: domain Description: AA_permease_2 Location: 2 97532 5-2 976390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParAB_family (cd02042), RVT-GII, GIIM (pfam08388), AcrR (COG1309), DDE_Tnp_1 (pfam01609), RVT_N (pfam13655), DDE_Tnp_4 (pfam13359), DDE_Tnp_1_4 (pfam13701), hydroxyacyl_CoA_DH (cd08254), CypX (COG2124)
DUF4096 (pfam13340), AA_permease_2 (pfam13520)