myRT

myRT report for GCA_005504395.1_ASM550439v1

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Seq: QYBA01000078.1 (4925 bp)
Overview 1 RT 1: 2-3089 bp Neighborhood of RT #1 [2, 3109] RVT-GII COG5421 COG4855 Feature: gene Location: 2-565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-200 bp Feature: gene Location: 1000-2652 bp Feature: domain Description: COG5421 Location: 1147-2629 bp Feature: domain Description: COG5421 Location: 1 1 47-2629 bp Feature: gene Location: 2879-3109 bp Feature: domain Description: COG4855 Location: 2888-3089 bp Feature: domain Description: COG4855 Location: 2888-3089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG5421 (Transposase ), COG4855 (Uncharacterized protein )

Seq: QYBA01000204.1 (12286 bp)
Overview 1 RT 1: 4480-9266 bp Neighborhood of RT #1 [4480, 9307] RVT-CRISPR TPR TPR COG4951 Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 4480-4632 bp Feature: gene Location: 5753-5914 bp Feature: gene Location: 6181-8007 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 6205-6454 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 62 05-6454 bp Feature: domain Description: TPR Location: 6613-6832 bp Feature: domain Description: TPR Location: 6613-6832 bp Feature: domain Description: TPR Location: 6889-7042 bp Feature: domain Description: TPR Location: 6889-7042 bp Feature: domain Description: COG4951 Location: 7135-7816 bp Feature: domain Description: COG4951 Location: 7135-7816 bp Feature: gene Location: 8042-9031 bp Feature: domain Description: Cas1_I-II-III Location: 8051-8996 bp Feature: domain Description: Cas1_I-II-III Location: 8051-8996 bp Feature: gene Location: 9035-9307 bp Feature: domain Description: Cas2_I_II_III Location: 9044-9266 bp Feature: domain Description: Cas2 _I_II_III Location: 9044-92 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, TPR (smart00028), COG4951 (Uncharacterized protein ), Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: QYBA01000243.1 (4684 bp)
Overview 1 RT 1: 2659-4340 bp Neighborhood of RT #1 [2659, 4600] RVT_N RVT-GII GIIM Feature: gene Location: 2659-2787 bp Feature: gene Location: 2799-3035 bp Feature: gene Location: 3050-4600 bp Feature: domain Description: RVT_N Location: 3119-3362 bp Feature: domain Description: RVT_N Location: 3 119-3 3 62 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3407-4055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 407-4055 bp Feature: domain Description: GIIM Note: maturase Location: 4109-4340 bp Feature: domain Description: GIIM Note: maturase Location: 4109-43 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)