myRT

myRT report for GCA_005776825.1_ASM577682v1

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Seq: SXOG01000170.1 (32667 bp)
Overview 1 RT 1: 16294-27711 bp Neighborhood of RT #1 [16294, 28697] PduO RpoE RVT-Retrons SWIM WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Feature: gene Location: 16294-16761 bp Feature: domain Description: PduO Location: 16300-16753 bp Feature: domain Description: PduO Location: 1 6300-1 6753 bp Feature: gene Location: 17170-17754 bp Feature: domain Description: RpoE Location: 17215-17713 bp Feature: domain Description: RpoE Location: 1 721 5-1 771 3 bp Feature: gene Location: 18307-19746 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18877-19501 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 8877-1 9501 bp Feature: gene Location: 20299-22170 bp Feature: domain Description: SWIM Location: 21763-21847 bp Feature: domain Description: SWIM Location: 21 763-21 847 bp Feature: gene Location: 22167-28697 bp Feature: domain Description: WD40 Location: 22440-22992 bp Feature: domain Description: WD40 Location: 22440-22992 bp Feature: domain Description: HEAT_2 Location: 23142-23361 bp Feature: domain Description: HEAT_2 Location: 231 42-23361 bp Feature: domain Description: HEAT_2 Location: 23397-23625 bp Feature: domain Description: HEAT_2 Location: 23397-23625 bp Feature: domain Description: HEAT_2 Location: 24015-24261 bp Feature: domain Description: HEAT_2 Location: 2401 5-24261 bp Feature: domain Description: HEAT_2 Location: 24477-24723 bp Feature: domain Description: HEAT_2 Location: 24477-24723 bp Feature: domain Description: HEAT_2 Location: 24864-25140 bp Feature: domain Description: HEAT_2 Location: 24864-251 40 bp Feature: domain Description: HEAT_2 Location: 25176-25332 bp Feature: domain Description: HEAT_2 Location: 251 76-25332 bp Feature: domain Description: HEAT_2 Location: 25362-25575 bp Feature: domain Description: HEAT_2 Location: 25362-25575 bp Feature: domain Description: HEAT_2 Location: 25995-26175 bp Feature: domain Description: HEAT_2 Location: 25995-261 75 bp Feature: domain Description: HEAT_2 Location: 26208-26439 bp Feature: domain Description: HEAT_2 Location: 26208-26439 bp Feature: domain Description: HEAT_2 Location: 26475-26700 bp Feature: domain Description: HEAT_2 Location: 26475-26700 bp Feature: domain Description: HEAT_2 Location: 26730-26853 bp Feature: domain Description: HEAT_2 Location: 26730-26853 bp Feature: domain Description: HEAT_2 Location: 26922-27120 bp Feature: domain Description: HEAT_2 Location: 26922-271 20 bp Feature: domain Description: HEAT_2 Location: 27477-27711 bp Feature: domain Description: HEAT_2 Location: 27477-2771 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PduO (COG2096), RpoE (COG3343), RVT-Retrons, SWIM (pfam04434), WD40 (smart00320), HEAT_2 (pfam13646)

Seq: SXOG01000011.1 (23088 bp)
Overview 1 RT 1: 1-4573 bp Neighborhood of RT #1 [1, 7449] DDE_Tnp_IS66 RVT-Retrons SWIM WGR_DNA_ligase Feature: gene Location: 1-741 bp Feature: domain Description: DDE_Tnp_IS66 Location: 250-634 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 50-634 bp Feature: gene Location: 771-2342 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1311-1941 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1311-1941 bp Feature: gene Location: 2654-4198 bp Feature: domain Description: SWIM Location: 4031-4115 bp Feature: domain Description: SWIM Location: 4031-4115 bp Feature: gene Location: 4342-7449 bp Feature: domain Description: WGR_DNA_ligase Location: 4357-4573 bp Feature: domain Description: WGR_DNA_ligase Location: 4357-4573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-Retrons, SWIM (pfam04434), WGR_DNA_ligase (cd07998)

Seq: SXOG01000132.1 (32101 bp)
Overview 1 RT 1: 388-5766 bp Neighborhood of RT #1 [388, 5789] Cas1_I-II-III RVT-CRISPR Cas2_I_II_III CRISPR_Cas6 Feature: gene Location: 388-1578 bp Feature: domain Description: Cas1_I-II-III Location: 406-1273 bp Feature: domain Description: Cas1_I-II-III Location: 406-1273 bp Feature: gene Location: 1596-4496 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1803-2406 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1803 -2406 bp Feature: gene Location: 4537-4824 bp Feature: domain Description: Cas2_I_II_III Location: 4549-4786 bp Feature: domain Description: Cas2_I_II_III Location: 4549-4786 bp Feature: gene Location: 4830-5789 bp Feature: domain Description: CRISPR_Cas6 Location: 5397-5766 bp Feature: domain Description: CRISPR_Cas6 Location: 53 97-5766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas1_I-II-III (cl00656), RVT-CRISPR, Cas2_I_II_III (cl11442), CRISPR_Cas6 (pfam10040)

Seq: SXOG01000066.1 (11588 bp)
Overview 1 RT 1: 2-2571 bp Neighborhood of RT #1 [2, 2594] RVT-GII pfam03781 STKc_PknB_like Feature: gene Location: 2-721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14-419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 -4 19 bp Feature: gene Location: 935-1129 bp Feature: domain Description: pfam03781 Location: 938-1127 bp Feature: domain Description: pfam03781 Location: 938-1127 bp Feature: gene Location: 1164-2594 bp Feature: domain Description: STKc_PknB_like Location: 1758-2571 bp Feature: domain Description: STKc_PknB_like Location: 1758-2571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), STKc_PknB_like (cd14014)

Seq: SXOG01000057.1 (11326 bp)
Overview 1 RT 1: 2-4415 bp Neighborhood of RT #1 [2, 4942] RVT-GII Abhydrolase_6 CheA HelD UvrD UvrD ANK Feature: gene Location: 2-871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14-185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14-185 bp Feature: gene Location: 1188-1904 bp Feature: domain Description: Abhydrolase_6 Location: 1200-1554 bp Feature: domain Description: Abhydrolase_6 Location: 1200-15 5 4 bp Feature: domain Description: CheA Location: 1665-1887 bp Feature: domain Description: CheA Location: 1665 -1887 bp Feature: gene Location: 2132-4942 bp Feature: domain Description: HelD Location: 2540-2627 bp Feature: domain Description: HelD Location: 25 40-2627 bp Feature: domain Description: UvrD Location: 3071-3356 bp Feature: domain Description: UvrD Location: 3071-335 6 bp Feature: domain Description: UvrD Location: 3566-3812 bp Feature: domain Description: UvrD Location: 35 66-3812 bp Feature: domain Description: ANK Location: 4100-4415 bp Feature: domain Description: ANK Location: 4100-4415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Abhydrolase_6 (pfam12697), CheA (COG0643), HelD (COG3973), UvrD (COG0210), ANK (smart00248)